Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L2Y54_RS16810 Genome accession   NZ_CP091244
Coordinates   3377158..3377655 (+) Length   165 a.a.
NCBI ID   WP_311196202.1    Uniprot ID   -
Organism   Thiothrix winogradskyi strain CT3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3372158..3382655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y54_RS16795 (L2Y54_16795) pckA 3372639..3374252 (+) 1614 WP_236497778.1 phosphoenolpyruvate carboxykinase (ATP) -
  L2Y54_RS16800 (L2Y54_16800) dbpA 3374346..3375722 (+) 1377 WP_236497779.1 ATP-dependent RNA helicase DbpA -
  L2Y54_RS16805 (L2Y54_16805) - 3375767..3377125 (+) 1359 WP_236497780.1 MFS transporter -
  L2Y54_RS16810 (L2Y54_16810) ssb 3377158..3377655 (+) 498 WP_311196202.1 single-stranded DNA-binding protein Machinery gene
  L2Y54_RS16815 (L2Y54_16815) - 3377882..3378595 (-) 714 WP_236497781.1 hypothetical protein -
  L2Y54_RS16820 (L2Y54_16820) radC 3378633..3379304 (-) 672 WP_202717689.1 RadC family protein -
  L2Y54_RS16825 (L2Y54_16825) coaBC 3379357..3380580 (+) 1224 WP_236497782.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  L2Y54_RS16830 (L2Y54_16830) - 3380567..3380656 (+) 90 Protein_3344 dUTP diphosphatase -
  L2Y54_RS16835 (L2Y54_16835) - 3381095..3381631 (+) 537 WP_236497783.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18133.04 Da        Isoelectric Point: 5.8072

>NTDB_id=648795 L2Y54_RS16810 WP_311196202.1 3377158..3377655(+) (ssb) [Thiothrix winogradskyi strain CT3]
MARGINKVILVGTVGKDPEMKYMPSGDAMANISVATNESWKDRNTGEKKESTEWHRVVFFRQLADIVGKYVRKGQQIYIE
GSLKTRSWEKDGQKHYATEIVASDMQMLGGNKSDGMNSGSYESAPQRSAPSNNGGDYGSGRNPPAAPAGNTSSRDFEDFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=648795 L2Y54_RS16810 WP_311196202.1 3377158..3377655(+) (ssb) [Thiothrix winogradskyi strain CT3]
ATGGCACGAGGTATCAACAAAGTTATTCTGGTCGGCACGGTCGGCAAAGATCCCGAAATGAAATACATGCCGAGTGGTGA
TGCAATGGCAAATATCAGCGTTGCCACCAATGAATCGTGGAAAGACCGCAATACCGGCGAGAAAAAAGAATCGACCGAAT
GGCATCGCGTCGTCTTTTTCCGCCAATTAGCGGATATTGTCGGCAAATACGTGCGTAAAGGGCAGCAAATTTACATCGAA
GGCAGCCTGAAAACCCGCTCATGGGAAAAAGACGGTCAAAAGCACTATGCCACTGAAATCGTTGCGTCTGATATGCAGAT
GCTCGGCGGTAATAAATCCGACGGCATGAATTCAGGCAGCTACGAAAGTGCCCCTCAGCGTAGCGCACCCAGTAATAATG
GTGGTGACTACGGCAGTGGTAGGAATCCACCTGCTGCTCCGGCAGGCAACACCTCCAGCCGTGACTTTGAAGACTTCGAC
GATGACATCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.944

100

0.485
  ssb Vibrio cholerae strain A1552

44.199

100

0.485
  ssb Neisseria meningitidis MC58

41.618

100

0.436
  ssb Neisseria gonorrhoeae MS11

41.618

100

0.436