Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   COC_RS0101910 Genome accession   NZ_AKVW01000001
Coordinates   379340..379861 (-) Length   173 a.a.
NCBI ID   WP_011336990.1    Uniprot ID   -
Organism   Cereibacter sphaeroides 2.4.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 374340..384861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COC_RS0101895 - 376159..376485 (-) 327 WP_011336987.1 YnfA family protein -
  COC_RS0101900 - 376485..376910 (-) 426 WP_011336988.1 helix-turn-helix domain-containing protein -
  COC_RS0101905 - 376994..379216 (+) 2223 WP_011336989.1 heavy metal translocating P-type ATPase -
  COC_RS0101910 ssb 379340..379861 (-) 522 WP_011336990.1 single-stranded DNA-binding protein Machinery gene
  COC_RS0101915 - 380075..380689 (+) 615 WP_011336991.1 lytic transglycosylase domain-containing protein -
  COC_RS0101920 serS 380802..382094 (-) 1293 WP_009563716.1 serine--tRNA ligase -
  COC_RS0101925 - 382201..382758 (-) 558 WP_011336992.1 superoxide dismutase family protein -
  COC_RS0101930 yajC 383050..383376 (+) 327 WP_002722646.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18628.35 Da        Isoelectric Point: 5.9820

>NTDB_id=64879 COC_RS0101910 WP_011336990.1 379340..379861(-) (ssb) [Cereibacter sphaeroides 2.4.1]
MAGSVNKVIIIGNLGRDPEVRSFQNGGKVVNLRIATSEQWRDRASGERKERTEWHSVAIFDENLARVAEQYLRKGSTVYI
EGQLETRKWQDQSGQDRYSTEVVLRPFRSSLTMLGGRGEGAGAGGGMGGGGYEDRGGPDNYDNYGSGPRGGASSGGAPSG
GGRRNDLDDEIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=64879 COC_RS0101910 WP_011336990.1 379340..379861(-) (ssb) [Cereibacter sphaeroides 2.4.1]
ATGGCGGGCTCGGTCAACAAGGTCATCATCATCGGCAATCTCGGCCGCGATCCCGAGGTGCGCAGCTTCCAGAACGGCGG
CAAGGTGGTGAACCTCCGCATCGCCACGTCCGAGCAGTGGCGCGACCGCGCCTCGGGCGAGCGGAAGGAGCGCACCGAAT
GGCACTCGGTCGCCATCTTCGATGAAAACCTGGCGCGGGTGGCCGAGCAGTATCTGCGCAAGGGCTCGACCGTCTATATC
GAGGGCCAGCTCGAGACGCGGAAGTGGCAGGACCAGTCGGGTCAGGACCGCTACTCGACCGAGGTCGTGCTGCGCCCGTT
CCGCAGCTCGCTGACGATGCTCGGAGGGCGCGGCGAAGGCGCGGGCGCCGGCGGCGGCATGGGCGGTGGCGGCTACGAGG
ATCGCGGCGGGCCGGACAACTACGACAATTACGGCAGCGGCCCCCGCGGCGGCGCCTCCTCGGGCGGCGCCCCGAGTGGC
GGCGGCCGCCGGAACGACCTCGACGACGAGATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.542

100

0.538
  ssb Glaesserella parasuis strain SC1401

46.237

100

0.497
  ssb Neisseria gonorrhoeae MS11

39.674

100

0.422
  ssb Neisseria meningitidis MC58

39.674

100

0.422

Multiple sequence alignment