Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   L2O48_RS03905 Genome accession   NZ_CP091185
Coordinates   816255..816848 (-) Length   197 a.a.
NCBI ID   WP_013855887.1    Uniprot ID   A0A233HKC5
Organism   Vibrio anguillarum strain J382     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 811255..821848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2O48_RS03885 (L2O48_03885) aroB 812187..813275 (-) 1089 WP_026027894.1 3-dehydroquinate synthase -
  L2O48_RS03890 (L2O48_03890) aroK 813300..813821 (-) 522 WP_010317691.1 shikimate kinase AroK -
  L2O48_RS03895 (L2O48_03895) pilQ 814008..815723 (-) 1716 WP_013855889.1 type IV pilus secretin PilQ family protein Machinery gene
  L2O48_RS03900 (L2O48_03900) pilP 815747..816268 (-) 522 WP_013855888.1 pilus assembly protein PilP Machinery gene
  L2O48_RS03905 (L2O48_03905) pilO 816255..816848 (-) 594 WP_013855887.1 type 4a pilus biogenesis protein PilO Machinery gene
  L2O48_RS03910 (L2O48_03910) pilN 816841..817443 (-) 603 WP_013855886.1 PilN domain-containing protein Machinery gene
  L2O48_RS03915 (L2O48_03915) pilM 817433..818443 (-) 1011 WP_013855885.1 type IV pilus assembly protein PilM Machinery gene
  L2O48_RS03920 (L2O48_03920) - 818593..821091 (+) 2499 WP_013855884.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23039.37 Da        Isoelectric Point: 4.3879

>NTDB_id=648211 L2O48_RS03905 WP_013855887.1 816255..816848(-) (pilO) [Vibrio anguillarum strain J382]
MTSFQDLDMDEMAEWPLLPQLLVILVLMLIIQGVGAWFYLMPQNEQLQNLKQQEEVLKSTLRIKASKAATLPQLQAQLDE
LTERYDFLLRQLPVQKELASMLASVNELGLDNALTFTRIDWGEKQNKEFLYRLPLNIELTGNYHDIGDFSEAIAKLPRII
NFDDVDWQRVSQESSTLHFRVRAYTYQFKQEVDDEKQ

Nucleotide


Download         Length: 594 bp        

>NTDB_id=648211 L2O48_RS03905 WP_013855887.1 816255..816848(-) (pilO) [Vibrio anguillarum strain J382]
ATGACTAGTTTTCAAGATCTTGATATGGATGAAATGGCTGAATGGCCGTTGCTGCCTCAACTGCTGGTTATTTTGGTGTT
GATGCTGATTATTCAAGGCGTTGGCGCGTGGTTCTACCTGATGCCTCAAAATGAGCAATTGCAGAACTTAAAACAGCAAG
AAGAGGTGCTGAAATCGACCTTACGGATTAAGGCCAGCAAAGCCGCCACCTTACCCCAGTTGCAAGCTCAACTGGATGAA
TTAACTGAACGTTATGATTTTTTATTACGCCAATTACCCGTGCAAAAAGAGCTCGCAAGCATGCTCGCATCGGTCAATGA
ACTAGGGCTAGATAACGCGTTAACCTTTACACGTATTGATTGGGGAGAAAAACAGAATAAAGAGTTTCTGTATCGTTTGC
CGCTCAATATCGAATTAACTGGGAATTACCACGACATTGGTGATTTCTCAGAGGCGATCGCGAAATTGCCCCGCATTATT
AATTTCGATGATGTTGATTGGCAACGGGTTAGCCAGGAAAGCAGCACGTTACATTTTAGGGTGCGCGCTTATACCTATCA
ATTCAAGCAAGAGGTGGACGATGAAAAACAATAA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(47-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio cholerae strain A1552

80.612

99.492

0.802
  pilO Vibrio campbellii strain DS40M4

70.37

95.939

0.675