Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG803_RS24380 Genome accession   NZ_CP107894
Coordinates   5360978..5361661 (-) Length   227 a.a.
NCBI ID   WP_327684425.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00467     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5355978..5366661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG803_RS24355 (OG803_24385) - 5356384..5356845 (-) 462 WP_327684420.1 GNAT family N-acetyltransferase -
  OG803_RS24360 (OG803_24390) - 5356931..5357386 (+) 456 WP_327684421.1 MerR family transcriptional regulator -
  OG803_RS24365 (OG803_24395) - 5357393..5358409 (+) 1017 WP_327684422.1 aldo/keto reductase -
  OG803_RS24370 (OG803_24400) - 5358442..5359632 (-) 1191 WP_327684423.1 acyltransferase -
  OG803_RS24375 (OG803_24405) - 5359629..5360705 (-) 1077 WP_327684424.1 alpha/beta hydrolase -
  OG803_RS24380 (OG803_24410) vraR 5360978..5361661 (-) 684 WP_327684425.1 response regulator transcription factor Regulator
  OG803_RS24385 (OG803_24415) - 5361658..5362977 (-) 1320 WP_327684426.1 sensor histidine kinase -
  OG803_RS24390 (OG803_24420) - 5363080..5363946 (-) 867 WP_327684427.1 DUF4429 domain-containing protein -
  OG803_RS24395 (OG803_24425) - 5364022..5365233 (-) 1212 WP_327684428.1 alpha/beta hydrolase -
  OG803_RS24400 (OG803_24430) - 5365440..5366117 (-) 678 WP_327684429.1 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24177.98 Da        Isoelectric Point: 6.0166

>NTDB_id=648210 OG803_RS24380 WP_327684425.1 5360978..5361661(-) (vraR) [Streptomyces sp. NBC_00467]
MTIRVIIVDDQAMVRAGFAALLAAQSDIDVVGEAPDGRSGVDVARSTHPDVVLMDVRMPEMDGLAAAREILHPPVGVVHV
PKVLMLTTFDVDDYVYEALRAGASGFLLKDAPPADLIAAVRVVAAGEALLAPSVTRRLIAEFASQRQAPRKDPSLRLNGL
TPRETEVLELIARGLSNQEIAAHLVLAEQTVKTHIGRVLSKLALRDRAQAVIFAYESGLVRPGAAGS

Nucleotide


Download         Length: 684 bp        

>NTDB_id=648210 OG803_RS24380 WP_327684425.1 5360978..5361661(-) (vraR) [Streptomyces sp. NBC_00467]
GTGACCATCCGCGTGATCATCGTCGACGACCAGGCCATGGTGCGGGCGGGCTTCGCCGCGCTGCTGGCCGCGCAGTCCGA
CATCGACGTGGTGGGCGAGGCGCCGGACGGACGGTCGGGCGTGGACGTGGCGCGCTCCACGCACCCGGACGTGGTGCTGA
TGGACGTCCGCATGCCGGAGATGGACGGCCTGGCCGCCGCCCGCGAGATCCTCCACCCGCCGGTGGGAGTCGTGCATGTG
CCCAAGGTGCTGATGCTGACCACCTTCGACGTGGACGACTATGTGTACGAGGCGCTGCGGGCGGGTGCTTCCGGATTCCT
GCTGAAGGACGCGCCCCCGGCGGATCTGATCGCGGCGGTACGGGTGGTGGCGGCGGGCGAGGCGCTTCTGGCCCCCTCGG
TCACCCGCCGGCTGATCGCCGAGTTCGCCTCCCAGCGGCAGGCGCCGCGGAAGGACCCCTCCCTGCGGCTGAACGGCCTG
ACCCCGCGCGAGACCGAGGTCCTGGAACTGATCGCGCGCGGTCTGTCCAACCAGGAGATCGCGGCCCATCTGGTGCTGGC
GGAGCAGACGGTGAAGACGCACATCGGCAGGGTCCTGTCGAAACTGGCGCTGCGGGACCGGGCGCAGGCAGTGATCTTCG
CGTACGAATCGGGCCTGGTTCGGCCCGGGGCGGCCGGTTCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-121)

Bacterial regulatory proteins, luxR family (GerE)

(160-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.152

98.238

0.414
  degU Bacillus subtilis subsp. subtilis str. 168

37.118

100

0.374