Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG803_RS24120 Genome accession   NZ_CP107894
Coordinates   5304356..5306089 (-) Length   577 a.a.
NCBI ID   WP_327684381.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00467     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5299356..5311089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG803_RS24110 (OG803_24140) - 5301134..5302390 (+) 1257 WP_327684379.1 sigma-70 family RNA polymerase sigma factor -
  OG803_RS24115 (OG803_24145) rcrQ 5302428..5304359 (-) 1932 WP_327684380.1 ABC transporter ATP-binding protein Regulator
  OG803_RS24120 (OG803_24150) rcrP 5304356..5306089 (-) 1734 WP_327684381.1 ABC transporter ATP-binding protein Regulator
  OG803_RS24125 (OG803_24155) - 5306180..5307625 (-) 1446 WP_327684382.1 FGGY family carbohydrate kinase -
  OG803_RS24130 (OG803_24160) - 5307662..5307961 (-) 300 WP_327684383.1 YtxH domain-containing protein -
  OG803_RS24150 (OG803_24180) - 5309055..5310299 (-) 1245 WP_327684384.1 trypsin-like serine protease -
  OG803_RS24155 (OG803_24185) - 5310384..5310911 (-) 528 WP_327684385.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62324.36 Da        Isoelectric Point: 6.5220

>NTDB_id=648209 OG803_RS24120 WP_327684381.1 5304356..5306089(-) (rcrP) [Streptomyces sp. NBC_00467]
MLIRLLRTHLSPYTRPIALLVALQLLQTSATLYLPTLNADIIDNGVVKGDTGYILRLGALMIGISLVQVTCNIGAVYYGA
RTASALGRDVRAAVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIVLALGQDVTLSTV
LLAVVPVLGIAVSLIVKKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEKDRFRGANTELTDVSLATGRLMAL
MFPTVLTVVNVSSVAVVWFGAHRVDSGAIQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIDEVLATESSVVP
PAAPVRKLHRRGYLEVRGAEFRYPGAEEPVLRDVSLSARPGETTAIIGSTGSGKSTLLGLVPRLFDATGGEVLVDGVDVR
ELEPALMARTVGLVPQKPFLFSGTVATNLRYGRPDASDEDLWQALEVAQAAGFVRELEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRSALTRETSEATVVIVAQRVSTIRDADRIVVLDEGQVVGAGTHRELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=648209 OG803_RS24120 WP_327684381.1 5304356..5306089(-) (rcrP) [Streptomyces sp. NBC_00467]
GTGCTGATACGACTGCTGCGGACCCATCTGAGTCCGTACACACGACCCATCGCCCTGCTGGTGGCGCTGCAGTTGCTGCA
GACCAGCGCCACTCTGTATCTGCCCACCCTGAACGCCGACATCATCGACAACGGTGTCGTGAAGGGTGACACGGGCTACA
TTCTGCGGCTCGGCGCGCTCATGATCGGCATCAGCCTCGTACAGGTCACCTGCAACATCGGTGCCGTCTACTACGGGGCG
CGGACCGCGTCCGCCCTCGGACGGGACGTGCGGGCGGCCGTCTTCGACCGGGTGCAGAGCTTCTCGGCCCGCGAGGTCGG
GCGCTTCGGAGCACCGTCGCTGATCACCCGGACGACCAACGACGTCCAGCAGGTGCAGATGCTGGTCCTGATGGCGTTCA
CCCTGATGGTGTCGGCTCCCATCATGTGTGTCGGCGGCATCGTGCTGGCGCTCGGCCAGGACGTGACCCTGTCCACCGTG
CTGCTGGCGGTGGTACCGGTGCTCGGCATCGCCGTGTCCCTGATCGTCAAGAAGATGCGGCCCCTGTTCCGGACCATGCA
GGAGCGGCTGGACACGGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGGGACG
GCTACGAGAAGGACCGCTTCCGCGGGGCGAACACGGAACTGACCGATGTGTCCCTGGCCACCGGCCGGCTGATGGCCTTG
ATGTTCCCGACCGTGCTGACGGTCGTGAACGTCTCGTCCGTCGCCGTGGTCTGGTTCGGTGCGCACCGCGTCGACAGCGG
CGCCATCCAGATCGGCGCGCTGACCGCGTTCCTCGCGTATCTCATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGGATCGACGAGGTCCTGGCGACGGAGTCGAGCGTGGTGCCG
CCCGCCGCGCCGGTGCGGAAGCTGCACCGGCGCGGGTATCTGGAGGTACGCGGCGCCGAGTTCCGCTACCCCGGGGCCGA
GGAGCCGGTGCTGCGTGACGTCTCGCTGTCGGCGCGGCCGGGCGAGACGACCGCGATCATCGGCTCCACCGGCAGCGGGA
AGTCGACACTGCTCGGTCTGGTGCCGCGCCTGTTCGACGCGACCGGCGGCGAGGTGCTCGTCGACGGGGTGGACGTCCGC
GAACTCGAACCGGCGCTGATGGCCCGGACCGTGGGGCTCGTGCCGCAGAAGCCGTTCCTCTTCTCCGGCACGGTGGCGAC
GAACCTGCGGTACGGGAGGCCCGACGCGAGCGACGAGGATCTGTGGCAGGCGCTGGAGGTGGCGCAGGCCGCCGGCTTCG
TGCGCGAACTGGAGGGCGGGCTCGACGCGCCGATCGCGCAGGGCGGCACGAACGTCTCCGGCGGTCAGCGCCAGCGGCTC
GCGATCGCCCGGACGCTGGTGCAGCGTCCGGAGATCTATCTGTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGTCCGCGCTGACACGCGAGACCTCGGAGGCGACGGTCGTCATCGTCGCCCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCGTGGTCCTGGACGAGGGACAGGTCGTGGGGGCGGGAACCCACCGCGAGCTGATGGCAGGAAAC
GAGACCTACCGGGAGATCGTGCTCTCGCAGCTGACGGAGGCTGAAGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.348

95.147

0.393