Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG803_RS24115 Genome accession   NZ_CP107894
Coordinates   5302428..5304359 (-) Length   643 a.a.
NCBI ID   WP_327684380.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00467     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5297428..5309359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG803_RS24100 (OG803_24130) - 5297807..5299069 (+) 1263 WP_327684377.1 FAD-dependent oxidoreductase -
  OG803_RS24105 (OG803_24135) dnaG 5299114..5301015 (+) 1902 WP_327684378.1 DNA primase -
  OG803_RS24110 (OG803_24140) - 5301134..5302390 (+) 1257 WP_327684379.1 sigma-70 family RNA polymerase sigma factor -
  OG803_RS24115 (OG803_24145) rcrQ 5302428..5304359 (-) 1932 WP_327684380.1 ABC transporter ATP-binding protein Regulator
  OG803_RS24120 (OG803_24150) rcrP 5304356..5306089 (-) 1734 WP_327684381.1 ABC transporter ATP-binding protein Regulator
  OG803_RS24125 (OG803_24155) - 5306180..5307625 (-) 1446 WP_327684382.1 FGGY family carbohydrate kinase -
  OG803_RS24130 (OG803_24160) - 5307662..5307961 (-) 300 WP_327684383.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69169.57 Da        Isoelectric Point: 5.5644

>NTDB_id=648208 OG803_RS24115 WP_327684380.1 5302428..5304359(-) (rcrQ) [Streptomyces sp. NBC_00467]
MSGPGGRMMMGPVERSMNFKGSGKRLLKRLAPDRRLLWVMLAAGVLSVAFSVVGPLVLGRATDLVFAGVVGRGMPEGTTK
SQAIDGLRDKGQGGLADMLSGVDFTPGEGIDFTAVGHVLLVALALYVISGLLALVSTRLSIRVINRAVYRMREDVQAKLS
RLPLSYFDRARRGEVLSRATNDIDNISQTLQQSMGQLINSLLTIVGVLAMMFWISPLLALVALVTVPVSVFVATKVGKRS
QPHFVQQWKSTGTLNAHIEEMYTGHALVKVFGRQEESARDFAEQNDALYEAGFKAQFNSGVMQPLMFFVSNLNYVLVAVV
GGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLIQSGVASAERIFELLDAEEQEADAPAAGRPEPRVGRVALEKV
AFRYDPDKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTAGRISLDGVDIADMSREELRSGIGMVLQDTWL
FGGTIADNIAYGAARDVTRAEIEEAARAAHADRFIRTLPEGYDTVLGDDGAEGAGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDGLLAAEGAYARLYSAQFAQAVV
EVE

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=648208 OG803_RS24115 WP_327684380.1 5302428..5304359(-) (rcrQ) [Streptomyces sp. NBC_00467]
ATGAGCGGGCCGGGTGGACGCATGATGATGGGCCCGGTCGAGCGGTCCATGAACTTCAAGGGCTCGGGCAAGCGGCTGCT
GAAACGGCTCGCGCCCGACCGGAGACTGCTGTGGGTGATGCTCGCGGCGGGTGTGCTGAGCGTCGCGTTCTCGGTGGTCG
GGCCGCTGGTGCTGGGCCGGGCGACCGACCTCGTCTTCGCGGGTGTCGTCGGCCGGGGCATGCCGGAGGGGACGACCAAG
TCCCAGGCGATCGACGGTCTGCGGGACAAAGGCCAGGGCGGACTCGCGGACATGCTGTCCGGGGTGGACTTCACGCCCGG
CGAGGGCATCGACTTCACCGCCGTCGGTCATGTGCTGCTGGTGGCGCTCGCGTTGTACGTGATCTCCGGGCTGCTGGCGC
TGGTCTCCACCCGGCTGTCGATCCGGGTGATCAACCGGGCCGTGTACCGGATGCGTGAGGACGTCCAGGCGAAGCTGTCC
CGGCTGCCGCTGTCGTATTTCGACCGGGCCAGGCGCGGCGAGGTGCTGAGCCGGGCCACCAACGACATCGACAACATCTC
GCAGACCCTCCAGCAGTCGATGGGCCAGCTCATCAACTCGCTGCTGACCATCGTCGGTGTACTGGCGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCCCTCGTCACCGTGCCCGTGTCGGTGTTCGTGGCGACGAAGGTGGGCAAGCGGTCG
CAGCCGCACTTCGTACAGCAGTGGAAGTCCACCGGCACGCTCAACGCCCACATCGAGGAGATGTACACCGGCCACGCCCT
GGTGAAGGTCTTCGGACGGCAGGAGGAGTCGGCAAGGGACTTCGCCGAGCAGAACGACGCCCTCTACGAGGCCGGCTTCA
AGGCGCAGTTCAACAGCGGTGTGATGCAGCCGCTGATGTTCTTCGTCTCGAACCTCAACTATGTGCTCGTGGCGGTCGTC
GGCGGACTGCGGGTCGCGTCCGGCGCCCTGTCGATCGGTGATGTGCAGGCCTTCATCCAGTACTCCCGGCAGTTCTCGAT
GCCGCTGACCCAGGTCGCCTCCATGGCGAACCTGATCCAGTCGGGTGTCGCGTCCGCCGAGCGGATCTTCGAGTTGCTGG
ACGCCGAGGAGCAGGAGGCCGACGCACCGGCCGCCGGGCGCCCTGAGCCGCGCGTCGGCCGGGTCGCCCTGGAGAAGGTC
GCCTTCCGCTACGACCCGGACAAGCCGCTCATCGAGGATCTGTCGCTGACGGTGGAACCGGGCCACACGGTCGCGATCGT
CGGCCCGACCGGCGCCGGCAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACGGCGGGGCGGATCAGCC
TCGACGGCGTCGACATAGCGGACATGTCGCGGGAGGAACTGCGGTCCGGTATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACCATCGCGGACAACATCGCCTACGGCGCCGCCCGGGACGTGACGCGGGCGGAGATCGAGGAGGCGGCGCG
CGCCGCGCACGCCGACCGCTTCATCCGTACGCTGCCCGAGGGCTACGACACGGTGCTCGGTGACGACGGGGCCGAGGGCG
CGGGAGTGAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGAC
GAGGCGACGAGTTCGGTCGACACCCGTACGGAGGTCCTGATCCAGAAGGCGATGGCGCGTCTCGCCCACGGCCGTACGAG
CTTTGTGATCGCCCACCGGCTCTCCACCATCCGGGACGCGGACGTGATCCTGGTGATGGAGAACGGGTCGATCGTCGAAC
AGGGCACGCACGACGGCCTGTTGGCGGCAGAAGGCGCCTATGCGCGGCTGTATTCGGCGCAGTTCGCGCAGGCGGTCGTC
GAGGTGGAGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-564)

ABC transporter transmembrane region (ABC_membrane)

(39-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.744

97.045

0.386