NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	L1871_RS19740	Genome accession	NZ_CP091176
Coordinates	4184926..4185801 (+)	Length	291 a.a.
NCBI ID	WP_103261555.1	Uniprot ID	-
Organism	Aeromonas caviae strain SCLZS52
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4179926..4190801

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1871_RS19720 (L1871_19715)	nadC	4180146..4181009 (+)	864	WP_052814467.1	carboxylating nicotinate-nucleotide diphosphorylase	-
L1871_RS19725 (L1871_19720)	tapA	4181332..4181769 (+)	438	WP_104456018.1	type IVa pilus major pilin TapA	-
L1871_RS19730 (L1871_19725)	pilB	4181773..4183479 (+)	1707	WP_104454847.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
L1871_RS19735 (L1871_19730)	pilC	4183607..4184848 (+)	1242	WP_010675822.1	type II secretion system F family protein	Machinery gene
L1871_RS19740 (L1871_19735)	pilD	4184926..4185801 (+)	876	WP_103261555.1	prepilin peptidase	Machinery gene
L1871_RS19745 (L1871_19740)	coaE	4185820..4186434 (+)	615	WP_052814464.1	dephospho-CoA kinase	-
L1871_RS19750 (L1871_19745)	zapD	4186472..4187194 (+)	723	WP_010675825.1	cell division protein ZapD	-
L1871_RS19755 (L1871_19750)	yacG	4187205..4187399 (+)	195	WP_103858092.1	DNA gyrase inhibitor YacG	-
L1871_RS19760 (L1871_19755)	mutT	4187457..4187861 (-)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
L1871_RS19765 (L1871_19760)	-	4187870..4189054 (-)	1185	WP_103858093.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 291 a.a. Molecular weight: 31979.12 Da Isoelectric Point: 7.0913

                                >NTDB_id=648198 L1871_RS19740 WP_103261555.1 4184926..4185801(+) (pilD) [Aeromonas caviae strain SCLZS52]

MVPLIELAQGLPWLYLSLIFLFSLMVGSFLNVVIHRLPIMMERAWHAEYSDYFGDGEATPPATGRYNLMVPRSRCPHCDH

PIGALENIPLLSWLWLRGRCRNCHAPISARYPLVELLTALLSVSVAAALAPGWGTLAALLLTWTLVALTFIDLDKMLLPD

QLTLPLLWGGLLFNLAGGFVPLADGVVGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS

LAGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWITLLWGDSITRWYLDVVL

Nucleotide

Download Length: 876 bp

                                >NTDB_id=648198 L1871_RS19740 WP_103261555.1 4184926..4185801(+) (pilD) [Aeromonas caviae strain SCLZS52]

ATGGTGCCTTTGATCGAACTGGCCCAGGGCTTGCCCTGGCTCTATCTCTCCTTGATTTTCCTTTTCTCCCTGATGGTGGG

CAGCTTCCTGAACGTGGTTATCCATCGTCTGCCCATCATGATGGAGCGGGCCTGGCATGCCGAATACAGCGACTATTTCG

GTGACGGTGAAGCGACTCCTCCTGCAACCGGACGATACAACCTCATGGTGCCCCGCTCCCGCTGCCCCCACTGCGACCAC

CCCATAGGGGCGCTGGAGAACATTCCCCTGCTGAGCTGGCTATGGCTCAGGGGGCGCTGCCGCAACTGCCACGCCCCCAT

TTCGGCTCGCTATCCCCTGGTCGAGCTGCTCACCGCCTTGCTGTCGGTCTCGGTAGCAGCCGCGCTTGCCCCTGGCTGGG

GCACCCTTGCCGCTCTGCTGCTCACCTGGACATTGGTCGCACTGACCTTCATCGACCTGGACAAGATGCTCTTGCCGGAT

CAGCTCACCCTGCCCCTGCTCTGGGGTGGCTTGCTGTTCAATCTGGCGGGCGGTTTCGTGCCCCTGGCCGATGGGGTGGT

CGGCGCCATGGCGGGTTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCT

ATGGCGACTTCAAACTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAAGCCTTGCCCATCGTGCTGCTGCTTTCCTCG

CTGGCGGGCGCCATCATCGGCATCGGTCTCATCCTGCTGCGCAACCACCACCAGGGCAAACCCATTCCCTTTGGCCCTTA

TCTCGCCATCGCGGGCTGGATAACGCTGCTGTGGGGCGATAGCATCACCCGCTGGTATCTTGATGTCGTGCTCTAG

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(140-248)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	60.417	98.969	0.598
pilD	Vibrio campbellii strain DS40M4	56.897	99.656	0.567
pilD	Acinetobacter baumannii D1279779	51.971	95.876	0.498
pilD	Acinetobacter nosocomialis M2	51.971	95.876	0.498
pilD	Neisseria gonorrhoeae MS11	51.341	89.691	0.46

Detailed information NTG0648198