Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L1776_RS18765 Genome accession   NZ_CP091174
Coordinates   4000706..4001197 (-) Length   163 a.a.
NCBI ID   WP_003281797.1    Uniprot ID   A0A210XTT8
Organism   Stutzerimonas stutzeri strain XX1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3995706..4006197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1776_RS18740 - 3995838..3997184 (-) 1347 WP_020306668.1 MotA/TolQ/ExbB proton channel family protein -
  L1776_RS18745 - 3997181..3997966 (-) 786 WP_013981723.1 DUF3450 domain-containing protein -
  L1776_RS18750 - 3998150..3998818 (+) 669 WP_020306670.1 OmpW/AlkL family protein -
  L1776_RS18755 - 3998889..3999818 (-) 930 WP_236450889.1 NAD-dependent epimerase/dehydratase family protein -
  L1776_RS18760 - 3999811..4000695 (-) 885 WP_017244908.1 sugar nucleotide-binding protein -
  L1776_RS18765 ssb 4000706..4001197 (-) 492 WP_003281797.1 single-stranded DNA-binding protein Machinery gene
  L1776_RS18770 - 4001369..4002736 (-) 1368 WP_017244909.1 MFS transporter -
  L1776_RS18775 uvrA 4002868..4005705 (+) 2838 WP_013981718.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18314.38 Da        Isoelectric Point: 5.9492

>NTDB_id=648170 L1776_RS18765 WP_003281797.1 4000706..4001197(-) (ssb) [Stutzerimonas stutzeri strain XX1]
MARGVNKVILIGNVGGDPETRYMPNGNAVTNITLATTDSWKDKQTGQLQERTEWHRVVLFGKVAEIAGEYLRKGSQCYIE
GRLQTREWEKDGVKRYTTEIVVDMNGTMQLLGGRGGSSDDAPRQPRPQREPQQAPRQQAQPQQPAARQQPAPDYDSFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=648170 L1776_RS18765 WP_003281797.1 4000706..4001197(-) (ssb) [Stutzerimonas stutzeri strain XX1]
ATGGCCAGAGGGGTGAACAAAGTCATCTTGATCGGCAATGTCGGCGGCGACCCGGAAACCCGCTACATGCCCAATGGCAA
TGCGGTGACCAACATCACGCTGGCAACCACCGACAGCTGGAAGGACAAGCAGACCGGTCAGCTTCAGGAGCGCACCGAGT
GGCACCGTGTGGTGCTGTTCGGCAAGGTCGCCGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGTGCTACATCGAA
GGCCGCCTGCAGACTCGCGAGTGGGAGAAGGATGGCGTCAAGCGCTACACCACCGAAATCGTCGTCGACATGAATGGCAC
CATGCAGCTGCTCGGCGGCCGTGGCGGCAGTTCCGATGACGCGCCACGTCAGCCGCGCCCGCAGCGCGAGCCGCAACAGG
CTCCGCGTCAGCAGGCTCAGCCGCAGCAGCCGGCCGCACGGCAGCAGCCAGCGCCGGACTATGACAGCTTCGATGACGAC
ATCCCTTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A210XTT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.571

100

0.607
  ssb Neisseria gonorrhoeae MS11

47.727

100

0.515
  ssb Glaesserella parasuis strain SC1401

45.355

100

0.509
  ssb Neisseria meningitidis MC58

46.591

100

0.503