Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   LQS91_RS18475 Genome accession   NZ_CP091172
Coordinates   3761044..3761862 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain MRSN57     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3756044..3766862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQS91_RS18460 (LQS91_18460) pilE 3756263..3756688 (-) 426 WP_000788336.1 type IV pilin protein Machinery gene
  LQS91_RS18465 (LQS91_18465) pilY2 3756685..3757167 (-) 483 WP_001046489.1 type IV pilin protein Machinery gene
  LQS91_RS18470 (LQS91_18470) pilY1 3757178..3761032 (-) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  LQS91_RS18475 (LQS91_18475) pilX 3761044..3761862 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LQS91_RS18480 (LQS91_18480) pilW 3761859..3762860 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  LQS91_RS18485 (LQS91_18485) pilV 3762861..3763421 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LQS91_RS18490 (LQS91_18490) fimU 3763415..3763888 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LQS91_RS18495 (LQS91_18495) ispH 3764058..3765008 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LQS91_RS18500 (LQS91_18500) gmk 3765131..3765760 (+) 630 WP_000015937.1 guanylate kinase -
  LQS91_RS18505 (LQS91_18505) rpoZ 3765833..3766111 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LQS91_RS18510 (LQS91_18510) - 3766150..3766280 (+) 131 Protein_3626 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=648086 LQS91_RS18475 WP_000149374.1 3761044..3761862(-) (pilX) [Acinetobacter baumannii strain MRSN57]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=648086 LQS91_RS18475 WP_000149374.1 3761044..3761862(-) (pilX) [Acinetobacter baumannii strain MRSN57]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAAGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACCAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993