Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OHV16_RS21505 Genome accession   NZ_CP107889
Coordinates   4757631..4759037 (+) Length   468 a.a.
NCBI ID   WP_266711289.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00470     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4752631..4764037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHV16_RS21485 (OHV16_21520) - 4752632..4753456 (-) 825 WP_266711285.1 sugar phosphate isomerase/epimerase -
  OHV16_RS21490 (OHV16_21525) - 4753725..4754675 (-) 951 WP_327662854.1 Ppx/GppA phosphatase family protein -
  OHV16_RS21495 (OHV16_21530) - 4754756..4755637 (+) 882 WP_327662853.1 hypothetical protein -
  OHV16_RS21500 (OHV16_21535) - 4755668..4757380 (-) 1713 WP_327670762.1 hypothetical protein -
  OHV16_RS21505 (OHV16_21540) radA/sms 4757631..4759037 (+) 1407 WP_266711289.1 DNA repair protein RadA Machinery gene
  OHV16_RS21510 (OHV16_21545) disA 4759130..4760254 (+) 1125 WP_266711290.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OHV16_RS21515 (OHV16_21550) - 4760331..4761164 (-) 834 WP_327670763.1 hypothetical protein -
  OHV16_RS21520 (OHV16_21555) - 4761351..4762016 (+) 666 WP_327662850.1 phosphatase PAP2 family protein -
  OHV16_RS21525 (OHV16_21560) - 4762095..4762778 (-) 684 WP_327662849.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 468 a.a.        Molecular weight: 49538.68 Da        Isoelectric Point: 8.2579

>NTDB_id=648088 OHV16_RS21505 WP_266711289.1 4757631..4759037(+) (radA/sms) [Streptomyces sp. NBC_00470]
MAARTKSKDRPSYRCTECGWQTAKWLGRCPECQAWGTIDEYGAPTVRTTAPGRVTTSALPIGQVDGKQATARTTGVPELD
RVLGGGLVPGAVVLVAGEPGVGKSTLLLDVAAKAASDEHKTLYVTGEESASQVRLRADRIHAIDDHLYLAAETDLSTVLG
HLDAVKPSLLILDSVQTIASGEIDGAPGGVSQVREVAGALIRASKERGMSTLLVGHVTKEGTIAGPRLLEHLVDVVLSFE
GDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQIP
SPRRTTSGLETSRVSMMLAVLEQRGKISALGKRDIYSATVGGVKLTEPSADLAVALALASAASDTPLPKNLVAIGEVGLA
GEVRRVTGVQRRLAEAHRLGFTHALVPSDPGKVPAGMKVLEVADIGDALRVLPKGRRREAPREPEQRR

Nucleotide


Download         Length: 1407 bp        

>NTDB_id=648088 OHV16_RS21505 WP_266711289.1 4757631..4759037(+) (radA/sms) [Streptomyces sp. NBC_00470]
ATGGCTGCCCGTACGAAATCCAAGGACCGTCCGTCCTACCGCTGCACGGAATGCGGCTGGCAGACGGCCAAGTGGCTGGG
CCGCTGCCCCGAGTGCCAGGCGTGGGGGACGATCGACGAGTACGGCGCGCCCACCGTGCGCACCACCGCACCGGGCCGCG
TCACCACCTCGGCGCTGCCCATCGGCCAGGTCGACGGCAAGCAGGCGACGGCCAGGACCACCGGCGTGCCCGAGCTCGAC
CGGGTGCTCGGCGGCGGCCTGGTGCCCGGCGCCGTGGTGCTGGTCGCGGGCGAGCCGGGCGTCGGCAAGTCCACGCTGCT
GCTCGACGTGGCGGCCAAGGCGGCCAGTGACGAGCACAAGACCCTCTACGTGACGGGCGAGGAGTCGGCCTCCCAGGTCC
GCCTGCGCGCCGACCGGATCCACGCGATCGACGACCACCTGTACCTGGCCGCCGAGACCGATCTGTCCACCGTCCTCGGC
CACTTGGACGCGGTGAAGCCGTCGCTGCTCATCCTGGACTCCGTACAGACGATCGCGTCCGGGGAGATCGACGGGGCGCC
CGGTGGGGTGTCGCAGGTGCGCGAGGTCGCGGGCGCGCTCATCCGCGCCTCCAAGGAGCGCGGCATGTCCACGCTCCTCG
TCGGCCACGTCACCAAGGAGGGCACGATCGCGGGACCGCGCCTCCTGGAGCACCTGGTGGACGTCGTCCTCAGCTTCGAG
GGCGACCGGCACGCGCGCCTGCGCCTCGTACGCGGCGTCAAGAACCGCTACGGGACGACGGACGAGGTCGGCTGCTTCGA
GCTGCACGACGAGGGCATCACGGGCCTCGCCGACCCCAGCGGCCTGTTCCTGACCCGGCGCGCCGAGCCGGTGCCCGGCA
CCTGTCTGACCGTCACCCTGGAGGGCCGCCGCCCGCTGGTCGCCGAGGTCCAGGCGCTCACCGTGGACTCCCAGATCCCC
TCGCCCCGCCGCACCACGTCCGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCCGTGCTCGAACAGCGCGGGAAGAT
CAGCGCGTTGGGCAAGAGGGACATCTACTCCGCGACGGTCGGCGGCGTGAAGCTGACCGAGCCCTCGGCCGACCTGGCCG
TGGCGCTCGCCCTCGCCTCCGCCGCGAGCGACACCCCGCTCCCCAAGAACCTTGTGGCGATCGGAGAAGTAGGCCTCGCG
GGCGAGGTCAGGCGGGTCACGGGCGTGCAGCGCCGGCTCGCCGAGGCGCACCGGCTCGGCTTCACACACGCGCTCGTTCC
GTCCGATCCGGGAAAGGTCCCGGCCGGTATGAAGGTCCTGGAAGTCGCCGATATAGGGGACGCTCTGCGGGTGCTGCCGA
AGGGTCGTCGGCGAGAGGCCCCACGGGAGCCGGAGCAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(368-428)

AAA domain (AAA_25)

(77-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(13-40)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.107

97.65

0.421
  radA Streptococcus pneumoniae D39

43.556

96.154

0.419
  radA Streptococcus pneumoniae R6

43.556

96.154

0.419
  radA Streptococcus pneumoniae Rx1

43.556

96.154

0.419
  radA Streptococcus mitis SK321

43.556

96.154

0.419
  radA Streptococcus mitis NCTC 12261

43.556

96.154

0.419
  radA Streptococcus pneumoniae TIGR4

43.556

96.154

0.419