Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   LQS91_RS18490 Genome accession   NZ_CP091172
Coordinates   3763415..3763888 (-) Length   157 a.a.
NCBI ID   WP_001214060.1    Uniprot ID   A0A0J0ZM89
Organism   Acinetobacter baumannii strain MRSN57     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3758415..3768888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQS91_RS18475 (LQS91_18475) pilX 3761044..3761862 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  LQS91_RS18480 (LQS91_18480) pilW 3761859..3762860 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  LQS91_RS18485 (LQS91_18485) pilV 3762861..3763421 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  LQS91_RS18490 (LQS91_18490) fimU 3763415..3763888 (-) 474 WP_001214060.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  LQS91_RS18495 (LQS91_18495) ispH 3764058..3765008 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  LQS91_RS18500 (LQS91_18500) gmk 3765131..3765760 (+) 630 WP_000015937.1 guanylate kinase -
  LQS91_RS18505 (LQS91_18505) rpoZ 3765833..3766111 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  LQS91_RS18510 (LQS91_18510) - 3766150..3766280 (+) 131 Protein_3626 hypothetical protein -
  LQS91_RS18515 (LQS91_18515) - 3766320..3768425 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16883.50 Da        Isoelectric Point: 8.5355

>NTDB_id=648089 LQS91_RS18490 WP_001214060.1 3763415..3763888(-) (fimU) [Acinetobacter baumannii strain MRSN57]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTSTLAFNANGVVANITQDTLLSICNFRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=648089 LQS91_RS18490 WP_001214060.1 3763415..3763888(-) (fimU) [Acinetobacter baumannii strain MRSN57]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTAGCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTTTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987