Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L1O00_RS02265 Genome accession   NZ_CP091140
Coordinates   475964..476551 (-) Length   195 a.a.
NCBI ID   WP_278171476.1    Uniprot ID   -
Organism   Aeromonas veronii strain b1-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 470964..481551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O00_RS02240 (L1O00_02235) cspA 472272..472484 (-) 213 WP_005316548.1 RNA chaperone/antiterminator CspA -
  L1O00_RS02245 (L1O00_02240) yjbD 473078..473362 (-) 285 WP_005340165.1 DUF3811 domain-containing protein -
  L1O00_RS02250 (L1O00_02245) - 473509..474411 (-) 903 WP_278171474.1 cation diffusion facilitator family transporter -
  L1O00_RS02255 - 474873..474998 (+) 126 WP_019445191.1 hypothetical protein -
  L1O00_RS02260 (L1O00_02250) - 475071..475814 (-) 744 WP_206902056.1 transporter substrate-binding domain-containing protein -
  L1O00_RS02265 (L1O00_02255) ssb 475964..476551 (-) 588 WP_278171476.1 single-stranded DNA-binding protein Machinery gene
  L1O00_RS02270 (L1O00_02260) - 476978..477625 (+) 648 WP_111809267.1 LuxR C-terminal-related transcriptional regulator -
  L1O00_RS02275 (L1O00_02265) - 477625..478068 (+) 444 WP_278171480.1 curli production assembly/transport protein CsgE -
  L1O00_RS02280 (L1O00_02270) - 478080..478481 (+) 402 WP_019445195.1 curli assembly protein CsgF -
  L1O00_RS02285 (L1O00_02275) - 478489..479328 (+) 840 WP_069554258.1 CsgG/HfaB family protein -
  L1O00_RS02290 (L1O00_02280) - 479519..480040 (+) 522 WP_278171485.1 curlin -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21613.14 Da        Isoelectric Point: 5.9301

>NTDB_id=647968 L1O00_RS02265 WP_278171476.1 475964..476551(-) (ssb) [Aeromonas veronii strain b1-3]
MASRGINKVILIGNLGQDPEVRYMPSGGAVTNITLATSETWRDKQTGEQKERTEWHRVVFMGKLAEVAGEYLKKGSQVYV
EGKLQTRKWQDQSGQERYTTEVLVDSFTGVMQMLGGRPQGGQGMGQNMSGQSQGNWGQPQQSMPAQQPMNQQRPAPAPQQ
NMQPQGGYGRPAQQPQSAPPVYNEPPMDFDDDIPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=647968 L1O00_RS02265 WP_278171476.1 475964..476551(-) (ssb) [Aeromonas veronii strain b1-3]
ATGGCCAGTCGAGGCATCAATAAAGTCATTCTGATCGGTAACCTCGGGCAAGACCCGGAAGTACGCTACATGCCGAGTGG
CGGTGCTGTGACCAACATTACTCTGGCTACCTCCGAAACCTGGCGCGACAAGCAGACCGGTGAGCAGAAAGAGCGTACCG
AATGGCATCGCGTTGTCTTCATGGGCAAGCTGGCCGAAGTGGCTGGCGAGTACCTGAAGAAAGGCTCCCAGGTCTATGTG
GAAGGCAAACTGCAGACCCGCAAGTGGCAGGATCAGAGTGGCCAGGAGCGCTACACCACTGAAGTGCTGGTCGACAGCTT
CACCGGCGTGATGCAGATGCTGGGTGGTCGTCCGCAAGGCGGTCAGGGTATGGGCCAAAACATGAGTGGCCAATCTCAGG
GTAACTGGGGTCAGCCGCAGCAGAGCATGCCTGCCCAGCAGCCGATGAATCAGCAGCGCCCGGCGCCTGCTCCGCAGCAG
AACATGCAGCCGCAAGGCGGTTATGGCCGTCCTGCCCAGCAGCCGCAATCTGCGCCGCCGGTATATAACGAGCCGCCGAT
GGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.347

100

0.708
  ssb Glaesserella parasuis strain SC1401

54.404

98.974

0.538
  ssb Neisseria gonorrhoeae MS11

46.316

97.436

0.451
  ssb Neisseria meningitidis MC58

45.789

97.436

0.446