Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   SCAZ3_RS06790 Genome accession   NZ_AIDX01000001
Coordinates   1416761..1417447 (+) Length   228 a.a.
NCBI ID   WP_003046762.1    Uniprot ID   -
Organism   Streptococcus canis FSL Z3-227     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1411761..1422447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS06765 (SCAZ3_02160) ktrB 1411867..1413243 (-) 1377 WP_003046748.1 potassium uptake transporter channel subunit KtrB -
  SCAZ3_RS06770 (SCAZ3_02165) rsmG 1413324..1414037 (-) 714 WP_003046751.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  SCAZ3_RS06775 (SCAZ3_02170) - 1414187..1414744 (+) 558 WP_003046754.1 LemA family protein -
  SCAZ3_RS06780 (SCAZ3_02175) htpX 1414792..1415694 (+) 903 WP_003046757.1 zinc metalloprotease HtpX -
  SCAZ3_RS06785 (SCAZ3_02180) - 1415967..1416500 (+) 534 WP_003046759.1 YceD family protein -
  SCAZ3_RS06790 (SCAZ3_02185) covR 1416761..1417447 (+) 687 WP_003046762.1 two-component system response regulator CovR/CsrR Regulator
  SCAZ3_RS06795 (SCAZ3_02190) - 1417453..1418955 (+) 1503 WP_003046765.1 HAMP domain-containing sensor histidine kinase -
  SCAZ3_RS06800 (SCAZ3_02195) nrdR 1419174..1419668 (+) 495 WP_003046767.1 transcriptional regulator NrdR -
  SCAZ3_RS06805 (SCAZ3_02200) - 1419652..1420821 (+) 1170 WP_003046769.1 DnaD domain protein -
  SCAZ3_RS06810 (SCAZ3_02205) dnaI 1420822..1421724 (+) 903 WP_003046771.1 primosomal protein DnaI -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26575.63 Da        Isoelectric Point: 4.6541

>NTDB_id=64792 SCAZ3_RS06790 WP_003046762.1 1416761..1417447(+) (covR) [Streptococcus canis FSL Z3-227]
MTKKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMT
ARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIESEKKLPSQGIYRDLVLNPQNRSVNRGDDEIPLTKREY
DLLSILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKVDIPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=64792 SCAZ3_RS06790 WP_003046762.1 1416761..1417447(+) (covR) [Streptococcus canis FSL Z3-227]
ATGACAAAGAAAATTTTAATTATCGAAGATGAAAAAAATCTCGCAAGGTTTGTTTCACTTGAACTGCAACATGAAGGTTA
TGAAGTAACCGTTGAAGTAAATGGTCGTGAAGGGTTAGAAACTGCCTTGGAAAAGGATTTTGATTTAATCTTGCTTGACT
TAATGCTTCCTGAAATGGATGGTTTTGAAGTGACCCGTCGCTTACAGACTGAAAAAACAACATATATCATGATGATGACT
GCACGTGATTCGATTATGGATGTGGTGGCAGGCTTGGACCGTGGTGCGGATGACTATATTGTTAAGCCATTTGCGATTGA
AGAATTGTTGGCTCGTATTCGTGCAATTTTCCGTCGTCAAGATATTGAATCTGAAAAGAAACTGCCTAGTCAAGGAATTT
ATCGTGACTTGGTCTTGAACCCGCAAAACCGTTCGGTTAATCGTGGGGATGATGAAATTCCCCTCACTAAACGTGAATAC
GACTTGCTTAGCATTTTGATGACAAACATGAACCGTGTGATGACACGTGAAGAATTGCTCTCAAATGTTTGGAAATATGA
TGAGGCAGTTGAAACAAACGTTGTTGATGTTTATATTCGTTACCTTCGTGGTAAAGTTGACATCCCAGGTAAGGAATCTT
ATATCCAAACCGTTCGCGGCATGGGATATGTTATTCGTGAGAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

82.096

100

0.825
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.96

99.561

0.667
  vicR Streptococcus mutans UA159

43.103

100

0.439
  micA Streptococcus pneumoniae Cp1015

41.739

100

0.421

Multiple sequence alignment