Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L2D50_RS21755 Genome accession   NZ_CP091120
Coordinates   4596659..4597192 (-) Length   177 a.a.
NCBI ID   WP_089196300.1    Uniprot ID   -
Organism   Serratia marcescens strain CM2019_254     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4591659..4602192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2D50_RS21720 (L2D50_21720) - 4592001..4592408 (-) 408 WP_025304432.1 VOC family protein -
  L2D50_RS21725 (L2D50_21725) - 4592456..4593124 (-) 669 WP_043139706.1 glutathione S-transferase -
  L2D50_RS21730 (L2D50_21730) - 4593121..4593564 (-) 444 WP_025304434.1 lipocalin-like domain-containing protein -
  L2D50_RS21735 (L2D50_21735) - 4593760..4594020 (+) 261 WP_025304435.1 YdgH/BhsA/McbA-like domain containing protein -
  L2D50_RS21740 (L2D50_21740) - 4594170..4594919 (+) 750 WP_173889852.1 3-oxoacyl-ACP reductase family protein -
  L2D50_RS21745 (L2D50_21745) - 4595183..4595395 (+) 213 WP_004936800.1 DUF1471 domain-containing protein -
  L2D50_RS21750 (L2D50_21750) - 4595617..4596573 (+) 957 WP_025304437.1 cyclase family protein -
  L2D50_RS21755 (L2D50_21755) ssb 4596659..4597192 (-) 534 WP_089196300.1 single-stranded DNA-binding protein SSB1 Machinery gene
  L2D50_RS21760 (L2D50_21760) uvrA 4597470..4600298 (+) 2829 WP_240275320.1 excinuclease ABC subunit UvrA -
  L2D50_RS21765 (L2D50_21765) - 4600528..4601580 (+) 1053 WP_043139692.1 NAD(P)-dependent alcohol dehydrogenase -
  L2D50_RS21770 (L2D50_21770) maa 4601612..4602169 (-) 558 WP_025304441.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18838.74 Da        Isoelectric Point: 5.2358

>NTDB_id=647834 L2D50_RS21755 WP_089196300.1 4596659..4597192(-) (ssb) [Serratia marcescens strain CM2019_254]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQSSAP
AASSNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=647834 L2D50_RS21755 WP_089196300.1 4596659..4597192(-) (ssb) [Serratia marcescens strain CM2019_254]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAAAAGACCG
AGTGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGCGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGATCCCTGCAGACGCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCAGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCCCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAGCAGCGCTCCG
GCGGCCAGCAGCAACGAACCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

75.824

100

0.78
  ssb Glaesserella parasuis strain SC1401

59.358

100

0.627
  ssb Neisseria gonorrhoeae MS11

47.594

100

0.503
  ssb Neisseria meningitidis MC58

46.369

100

0.469