Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   L1999_RS28180 Genome accession   NZ_CP091110
Coordinates   5971337..5971711 (-) Length   124 a.a.
NCBI ID   WP_235741536.1    Uniprot ID   -
Organism   Neobacillus drentensis strain JC05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5966337..5976711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1999_RS28155 (L1999_28155) - 5967993..5968211 (+) 219 WP_235741531.1 spore germination protein -
  L1999_RS28160 (L1999_28160) - 5968361..5969545 (-) 1185 WP_235741532.1 3D domain-containing protein -
  L1999_RS28165 (L1999_28165) - 5969755..5970177 (-) 423 WP_235741533.1 hypothetical protein -
  L1999_RS28170 (L1999_28170) - 5970395..5970808 (+) 414 WP_235741534.1 helix-turn-helix domain-containing protein -
  L1999_RS28175 (L1999_28175) - 5971126..5971350 (-) 225 WP_235741535.1 hypothetical protein -
  L1999_RS28180 (L1999_28180) ssbB 5971337..5971711 (-) 375 WP_235741536.1 single-stranded DNA-binding protein Machinery gene
  L1999_RS28185 (L1999_28185) - 5971958..5972389 (+) 432 WP_235741537.1 YwpF-like family protein -
  L1999_RS28190 (L1999_28190) - 5972785..5973045 (+) 261 WP_235741538.1 hypothetical protein -
  L1999_RS28195 (L1999_28195) - 5973079..5973408 (-) 330 WP_235741539.1 hypothetical protein -
  L1999_RS28200 (L1999_28200) fabZ 5973514..5973948 (-) 435 WP_098527832.1 3-hydroxyacyl-ACP dehydratase FabZ -
  L1999_RS28205 (L1999_28205) - 5974022..5974330 (-) 309 WP_235741540.1 DNA-directed RNA polymerase subunit beta -
  L1999_RS28210 (L1999_28210) - 5974589..5975590 (-) 1002 WP_235741541.1 rod shape-determining protein -
  L1999_RS28215 (L1999_28215) spoIIID 5975845..5976117 (-) 273 WP_007086083.1 sporulation transcriptional regulator SpoIIID -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13982.94 Da        Isoelectric Point: 9.1834

>NTDB_id=647812 L1999_RS28180 WP_235741536.1 5971337..5971711(-) (ssbB) [Neobacillus drentensis strain JC05]
MINQVTLVGRLTRDPELKKTTEGTAVTHISLAVNRPFRNHNGEIETDFVPCTLWRKAAENTCQYCRKGTVVGITGRLQSR
NYDNKEGKKVYVTEVVAETIRFLSPKPHDVVPEQRKEETAVGIS

Nucleotide


Download         Length: 375 bp        

>NTDB_id=647812 L1999_RS28180 WP_235741536.1 5971337..5971711(-) (ssbB) [Neobacillus drentensis strain JC05]
ATGATTAATCAAGTCACACTAGTTGGCCGGTTGACCCGGGATCCAGAGTTGAAAAAGACAACGGAAGGAACGGCTGTGAC
GCATATTTCCCTGGCGGTAAATCGACCGTTTCGTAATCATAATGGCGAGATTGAGACAGATTTTGTGCCGTGTACGCTTT
GGCGGAAGGCAGCCGAAAACACTTGCCAATATTGTCGAAAAGGAACGGTGGTGGGCATTACCGGCAGACTTCAATCGCGC
AATTACGACAATAAGGAGGGGAAAAAGGTGTATGTCACCGAGGTAGTGGCAGAAACGATTCGTTTTCTAAGTCCCAAGCC
GCACGATGTTGTACCAGAGCAAAGAAAGGAGGAAACCGCCGTTGGGATATCATGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

62.385

87.903

0.548
  ssb Latilactobacillus sakei subsp. sakei 23K

50.833

96.774

0.492
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.717

85.484

0.468
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.593

91.129

0.379