Detailed information    

insolico Bioinformatically predicted

Overview


Name   ssb   Type   Machinery gene
Locus tag   L1704_RS11930 Genome accession   NZ_CP091107
Coordinates   2288850..2289350 (-) Length   166 a.a.
NCBI ID   WP_003131953.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain UC109     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context


Location: 2283850..2294350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1704_RS11900 (L1704_11900) gnd 2283907..2284812 (-) 906 WP_032398514.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  L1704_RS11905 (L1704_11905) - 2284915..2285805 (-) 891 WP_081196285.1 IS982-like element ISLll1 family transposase -
  L1704_RS11910 (L1704_11910) - 2286183..2287031 (+) 849 WP_003131770.1 MurR/RpiR family transcriptional regulator -
  L1704_RS11915 (L1704_11915) - 2287069..2287377 (+) 309 WP_017865196.1 DUF960 domain-containing protein -
  L1704_RS11920 (L1704_11920) - 2287459..2288232 (-) 774 WP_003131951.1 metallophosphoesterase -
  L1704_RS11925 (L1704_11925) rpsR 2288432..2288677 (-) 246 WP_003131952.1 30S ribosomal protein S18 -
  L1704_RS11930 (L1704_11930) ssb 2288850..2289350 (-) 501 WP_003131953.1 single-stranded DNA-binding protein Machinery gene
  L1704_RS11935 (L1704_11935) rpsF 2289380..2289673 (-) 294 WP_003131954.1 30S ribosomal protein S6 -
  L1704_RS11940 (L1704_11940) - 2289865..2290719 (-) 855 WP_058221735.1 undecaprenyl-diphosphate phosphatase -
  L1704_RS11945 (L1704_11945) - 2291242..2292708 (+) 1467 WP_017865200.1 amino acid permease -

Sequence


Protein


Download         Length: 166 a.a.        Molecular weight: 18304.13 Da        Isoelectric Point: 5.2279

>NTDB_id=647756 L1704_RS11930 WP_003131953.1 2288850..2289350(-) (ssb) [Lactococcus lactis subsp. lactis strain UC109]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=647756 L1704_RS11930 WP_003131953.1 2288850..2289350(-) (ssb) [Lactococcus lactis subsp. lactis strain UC109]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.465

100

0.627

  ssbA Bacillus subtilis subsp. subtilis str. 168

57.803

100

0.602

  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373

  ssb Glaesserella parasuis strain SC1401

35.028

100

0.373