Detailed information
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | L1704_RS11930 | Genome accession | NZ_CP091107 |
| Coordinates | 2288850..2289350 (-) | Length | 166 a.a. |
| NCBI ID | WP_003131953.1 | Uniprot ID | - |
| Organism | Lactococcus lactis subsp. lactis strain UC109 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2283850..2294350
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1704_RS11900 (L1704_11900) | gnd | 2283907..2284812 (-) | 906 | WP_032398514.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| L1704_RS11905 (L1704_11905) | - | 2284915..2285805 (-) | 891 | WP_081196285.1 | IS982-like element ISLll1 family transposase | - |
| L1704_RS11910 (L1704_11910) | - | 2286183..2287031 (+) | 849 | WP_003131770.1 | MurR/RpiR family transcriptional regulator | - |
| L1704_RS11915 (L1704_11915) | - | 2287069..2287377 (+) | 309 | WP_017865196.1 | DUF960 domain-containing protein | - |
| L1704_RS11920 (L1704_11920) | - | 2287459..2288232 (-) | 774 | WP_003131951.1 | metallophosphoesterase | - |
| L1704_RS11925 (L1704_11925) | rpsR | 2288432..2288677 (-) | 246 | WP_003131952.1 | 30S ribosomal protein S18 | - |
| L1704_RS11930 (L1704_11930) | ssb | 2288850..2289350 (-) | 501 | WP_003131953.1 | single-stranded DNA-binding protein | Machinery gene |
| L1704_RS11935 (L1704_11935) | rpsF | 2289380..2289673 (-) | 294 | WP_003131954.1 | 30S ribosomal protein S6 | - |
| L1704_RS11940 (L1704_11940) | - | 2289865..2290719 (-) | 855 | WP_058221735.1 | undecaprenyl-diphosphate phosphatase | - |
| L1704_RS11945 (L1704_11945) | - | 2291242..2292708 (+) | 1467 | WP_017865200.1 | amino acid permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18304.13 Da Isoelectric Point: 5.2279
>NTDB_id=647756 L1704_RS11930 WP_003131953.1 2288850..2289350(-) (ssb) [Lactococcus lactis subsp. lactis strain UC109]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSAREGMGGGTSAGSYSAPSQSTNNTPRPQTNNNNATPNFGRDADPFGSSPMEIS
DDDLPF
Nucleotide
Download Length: 501 bp
>NTDB_id=647756 L1704_RS11930 WP_003131953.1 2288850..2289350(-) (ssb) [Lactococcus lactis subsp. lactis strain UC109]
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
ATGATTAACAATGTTGTATTAGTAGGACGCATTACTCGCGATCCTGAACTTCGATACACCCCTCAAAATCAAGCTGTCGC
AACATTTTCATTGGCTGTAAACCGTCAATTTAAAAATGCGAATGGCGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAGAATTTGGCGAATTGGGCTAAAAAAGGAGCTTTGATTGGGGTAACTGGTCGAATTCAAACACGT
AACTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGACAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGTGAAGGTATGGGAGGCGGAACTTCTGCTGGTTCATATTCTGCACCTAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAACAATAATGCAACACCGAATTTCGGTCGTGATGCTGATCCGTTTGGTAGCTCACCGATGGAAATTTCG
GATGATGACCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.465 |
100 |
0.627 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
57.803 |
100 |
0.602 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.855 |
0.373 |
| ssb | Glaesserella parasuis strain SC1401 |
35.028 |
100 |
0.373 |