Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OHN37_RS32110 Genome accession   NZ_CP107878
Coordinates   7005849..7007474 (+) Length   541 a.a.
NCBI ID   WP_266522168.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00485     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 7000849..7012474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN37_RS32075 (OHN37_32065) lepB 7000896..7001624 (+) 729 WP_266522158.1 signal peptidase I -
  OHN37_RS32080 (OHN37_32070) lepB 7001617..7002735 (+) 1119 WP_266522160.1 signal peptidase I -
  OHN37_RS32085 (OHN37_32075) lepB 7002623..7003606 (+) 984 WP_266926523.1 signal peptidase I -
  OHN37_RS32090 (OHN37_32080) lepB 7003732..7004508 (+) 777 WP_266522162.1 signal peptidase I -
  OHN37_RS32095 (OHN37_32085) - 7004498..7005031 (+) 534 WP_266926525.1 NUDIX hydrolase -
  OHN37_RS32100 (OHN37_32090) - 7005088..7005396 (+) 309 WP_003965949.1 DUF2469 domain-containing protein -
  OHN37_RS32105 (OHN37_32095) - 7005485..7005847 (+) 363 WP_266522166.1 YraN family protein -
  OHN37_RS32110 (OHN37_32100) comM 7005849..7007474 (+) 1626 WP_266522168.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OHN37_RS32115 (OHN37_32105) dprA 7007471..7008625 (+) 1155 WP_327667315.1 DNA-processing protein DprA -
  OHN37_RS32120 (OHN37_32110) whiG 7008903..7009745 (+) 843 WP_266522173.1 RNA polymerase sigma factor WhiG -
  OHN37_RS32125 (OHN37_32115) - 7009819..7010376 (+) 558 WP_266523784.1 helix-turn-helix domain-containing protein -
  OHN37_RS32130 (OHN37_32120) - 7010265..7010942 (-) 678 WP_266522176.1 M23 family metallopeptidase -
  OHN37_RS32135 (OHN37_32125) rpsB 7011213..7012172 (+) 960 WP_266522178.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 56709.01 Da        Isoelectric Point: 6.8156

>NTDB_id=647750 OHN37_RS32110 WP_266522168.1 7005849..7007474(+) (comM) [Streptomyces sp. NBC_00485]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLSESRDRVRAAVVNSGGEWPQKKLTVGLSPASVPKAGSG
FDMAIACAVLGASERIDPRVLADIVMIGELGLDGRVRPVRGILPAVLAAADAGYEQVVVPECAAAEASLVPGVSVLGVRS
LRQLIAVLADEPVPDEEPDERGRPDPLLAGLRVPGTGAATGMHSLGAAKYDHGHDLADVVGQTSARTAVEVAAAGGHHLF
LEGPPGAGKTMLAERLPAILPRLGRTESLEVTAVHSVAGLLPPGKPMINVAPYCAPHHSATMQALVGGGPGMARPGAVSL
SHRGVLFLDETPEFSSRALDALRQPLEAGHVVIARSAGVVRFPAKFLMVLAANPCPCGRFSQRDDFCECPPSAIRRYQAR
LSGPLLDRVDLRVEVDRVTRAELTRRDGHGESTVTVADRVRAARERAAARLEGTPWLTNSEVPGQELRGRWHAASGAMDE
AERNLERGVLTARGLDRVLRVAWTVADLVGHDRPDATDVALALQLRTGVPRGVPMAIGART

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=647750 OHN37_RS32110 WP_266522168.1 7005849..7007474(+) (comM) [Streptomyces sp. NBC_00485]
ATGGGCTTCGCGCGTACGTGCTCGGTGGCGCTGGTCGGCGTCGAGGGTGTGGTGGTCGAGGTCCAGGCCGATCTGGAGCC
CGGAGTGGCGGCGTTCACGCTCGTGGGGCTGCCGGACAAGAGCCTGAGCGAGAGCCGGGACCGGGTGCGGGCGGCGGTCG
TCAACTCCGGTGGCGAATGGCCGCAGAAGAAACTCACGGTCGGGCTCAGCCCGGCGTCGGTGCCGAAGGCCGGCAGCGGC
TTCGACATGGCCATCGCCTGCGCCGTGCTCGGCGCCTCCGAGCGGATCGATCCGCGGGTGCTCGCCGACATCGTGATGAT
CGGGGAGCTGGGACTGGACGGTCGGGTCCGGCCCGTCCGGGGCATCCTGCCGGCGGTGCTGGCCGCGGCGGACGCCGGCT
ACGAACAGGTGGTGGTGCCCGAGTGCGCGGCCGCGGAGGCCTCCCTGGTGCCTGGCGTGTCCGTACTCGGTGTGCGCAGC
CTGCGGCAGCTGATCGCGGTCCTGGCGGACGAGCCCGTGCCCGATGAGGAACCGGACGAGCGGGGCCGCCCGGATCCGCT
CCTCGCCGGTCTGCGGGTGCCCGGCACCGGCGCGGCCACGGGGATGCACAGCCTGGGCGCCGCAAAGTACGACCACGGCC
ATGACCTCGCCGATGTGGTGGGCCAGACCTCGGCGAGGACCGCGGTGGAGGTCGCCGCGGCGGGCGGCCATCACCTCTTC
CTTGAGGGCCCGCCGGGCGCCGGAAAGACGATGCTCGCGGAGCGACTGCCCGCCATCCTGCCCCGGCTCGGCCGGACCGA
GTCGCTCGAGGTCACCGCGGTCCACTCGGTGGCCGGTCTGCTGCCCCCGGGCAAACCCATGATCAACGTCGCACCGTACT
GCGCTCCGCACCACTCGGCGACCATGCAGGCCCTCGTGGGCGGTGGACCCGGCATGGCGCGCCCCGGCGCCGTCTCGCTC
TCCCATCGCGGCGTTCTCTTTCTCGACGAGACACCCGAGTTCAGCAGCCGGGCCCTCGACGCGCTGCGGCAGCCCCTGGA
GGCCGGGCATGTCGTGATCGCGCGCAGCGCGGGCGTCGTGCGGTTCCCGGCGAAGTTCCTGATGGTGTTGGCCGCCAACC
CTTGTCCGTGCGGCCGTTTCTCGCAGCGGGACGATTTCTGCGAGTGTCCGCCCTCGGCGATCCGCCGTTACCAGGCGCGC
CTGTCCGGCCCCCTGCTCGACCGCGTCGACCTGAGGGTCGAGGTCGATCGGGTCACCCGGGCCGAGCTGACCCGGCGCGA
TGGCCACGGCGAGTCCACCGTCACGGTCGCCGACCGGGTGCGCGCGGCCAGGGAACGGGCGGCGGCCCGGCTCGAAGGCA
CCCCATGGCTGACCAACAGCGAAGTCCCCGGCCAGGAGCTGCGCGGTCGCTGGCACGCCGCGAGCGGAGCGATGGACGAG
GCGGAACGCAACCTGGAGCGAGGCGTGCTGACCGCCCGCGGTCTCGACCGCGTGCTGCGCGTCGCCTGGACCGTCGCGGA
CCTCGTCGGCCACGACCGACCCGACGCCACGGACGTCGCCCTGGCGCTGCAACTGCGTACCGGCGTACCGCGCGGCGTGC
CCATGGCCATCGGGGCGCGGACATGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-422)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

38.476

99.445

0.383
  comM Vibrio cholerae O1 biovar El Tor strain E7946

39.163

97.227

0.381
  comM Vibrio cholerae strain A1552

39.163

97.227

0.381
  comM Acinetobacter baylyi ADP1

39.804

94.27

0.375
  comM Glaesserella parasuis strain SC1401

36.822

98.891

0.364
  comM Legionella pneumophila str. Paris

36.981

97.967

0.362
  comM Legionella pneumophila strain ERS1305867

36.981

97.967

0.362