Detailed information NTG0647541

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: K9U01_RS17080
• Genome accession: NZ_CP091078
• Coordinates: 3971114..3972172 (-)
• Length: 352 a.a.
• NCBI ID: WP_039423791.1
• Uniprot ID: -
• Organism: Xanthomonas arboricola pv. pruni strain R1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3966114..3977172

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K9U01_RS17060 (K9U01_17060)	-	3967234..3969129 (-)	1896	WP_043088173.1	type IV pilus secretin PilQ family protein	-
K9U01_RS17065 (K9U01_17065)	-	3969149..3969682 (-)	534	Protein_3338	pilus assembly protein PilP	-
K9U01_RS17070 (K9U01_17070)	-	3969679..3970344 (-)	666	WP_039512382.1	type 4a pilus biogenesis protein PilO	-
K9U01_RS17075 (K9U01_17075)	-	3970341..3971114 (-)	774	WP_039512383.1	PilN domain-containing protein	-
K9U01_RS17080 (K9U01_17080)	comM	3971114..3972172 (-)	1059	WP_039423791.1	pilus assembly protein PilM	Machinery gene
K9U01_RS17085 (K9U01_17085)	-	3972291..3974804 (+)	2514	WP_126750780.1	penicillin-binding protein 1A	-
K9U01_RS17090 (K9U01_17090)	-	3975019..3975669 (+)	651	WP_039512385.1	hypothetical protein	-
K9U01_RS17095 (K9U01_17095)	-	3975772..3977061 (-)	1290	WP_024938127.1	citrate synthase	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37622.21 Da
• Isoelectric Point: 4.3924

>NTDB_id=647541 K9U01_RS17080 WP_039423791.1 3971114..3972172(-) (comM) [Xanthomonas arboricola pv. pruni strain R1]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=647541 K9U01_RS17080 WP_039423791.1 3971114..3972172(-) (comM) [Xanthomonas arboricola pv. pruni strain R1]
GTGGGGCTTCTACCCAAGAGTCAATCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCTTGCAGCTGTC
GCGCAGCGGGAACCGTTTCCGCGTGGAGCATTACGCGGTGGAACCGTTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTCGAGGCGGTTGGCGAAGCGATTCGTCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAATGCCGCAGCTGCG
GTGGCCGGGTCGGCGGTGATCACCAAGCTGATTCCGATGCCGGCCGATCTGGACGACAGCGATCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTCAATCTCGACTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCCGCGCTGGAACTCGGT
GGCCTGACCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTTGCCCTGGTCGCCAGCGAGTTGCCGGT
GGCCGCCGATGCGGTGGTTGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCCGGTCGCAGCC
TGTACAGCCGCGAGCAGGTCTTCGGCGGCAAGCAGCTCACCGACGAGGTGATGCGCCGTTACGGGTTGACCTACGAGGAG
GCCGGCCTAGCCAAGCGTCAGGGCGGCTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAGGCGACGGT
GCAGCAGATCAGCCGTTTGCTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GCTGCGCTGCGCTGTCGCGCCTGCCGGAAATGGTGGAAGAACAGCTCGGCGTGACCACCGTGGTCGCCAACCCGCTCGCG
CAGATGACGCTGGGCCCGAAGGTCCAGGCGCATGCGCTGGCGCTGGATGCACCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter baylyi ADP1	51.282	99.716	0.511
comM	Acinetobacter nosocomialis M2	51.136	100	0.511
pilM	Acinetobacter baumannii D1279779	50.852	100	0.509
pilM	Legionella pneumophila strain ERS1305867	47.293	99.716	0.472