Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K9U02_RS03320 Genome accession   NZ_CP091075
Coordinates   776242..777300 (-) Length   352 a.a.
NCBI ID   WP_039423791.1    Uniprot ID   -
Organism   Xanthomonas arboricola pv. pruni strain T1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 771242..782300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9U02_RS03300 (K9U02_03300) - 772362..774257 (-) 1896 WP_043088173.1 type IV pilus secretin PilQ family protein -
  K9U02_RS03305 (K9U02_03305) - 774277..774810 (-) 534 WP_069686659.1 pilus assembly protein PilP -
  K9U02_RS03310 (K9U02_03310) - 774807..775472 (-) 666 WP_039512382.1 type 4a pilus biogenesis protein PilO -
  K9U02_RS03315 (K9U02_03315) - 775469..776242 (-) 774 WP_039512383.1 PilN domain-containing protein -
  K9U02_RS03320 (K9U02_03320) comM 776242..777300 (-) 1059 WP_039423791.1 pilus assembly protein PilM Machinery gene
  K9U02_RS03325 (K9U02_03325) - 777419..779932 (+) 2514 WP_126750780.1 penicillin-binding protein 1A -
  K9U02_RS03330 (K9U02_03330) - 780147..780797 (+) 651 WP_039512385.1 hypothetical protein -
  K9U02_RS03335 (K9U02_03335) - 780900..782189 (-) 1290 WP_024938127.1 citrate synthase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37622.21 Da        Isoelectric Point: 4.3924

>NTDB_id=647520 K9U02_RS03320 WP_039423791.1 776242..777300(-) (comM) [Xanthomonas arboricola pv. pruni strain T1]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=647520 K9U02_RS03320 WP_039423791.1 776242..777300(-) (comM) [Xanthomonas arboricola pv. pruni strain T1]
GTGGGGCTTCTACCCAAGAGTCAATCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCTTGCAGCTGTC
GCGCAGCGGGAACCGTTTCCGCGTGGAGCATTACGCGGTGGAACCGTTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTCGAGGCGGTTGGCGAAGCGATTCGTCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAATGCCGCAGCTGCG
GTGGCCGGGTCGGCGGTGATCACCAAGCTGATTCCGATGCCGGCCGATCTGGACGACAGCGATCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTCAATCTCGACTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCCGCGCTGGAACTCGGT
GGCCTGACCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTTGCCCTGGTCGCCAGCGAGTTGCCGGT
GGCCGCCGATGCGGTGGTTGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCCGGTCGCAGCC
TGTACAGCCGCGAGCAGGTCTTCGGCGGCAAGCAGCTCACCGACGAGGTGATGCGCCGTTACGGGTTGACCTACGAGGAG
GCCGGCCTAGCCAAGCGTCAGGGCGGCTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAGGCGACGGT
GCAGCAGATCAGCCGTTTGCTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GCTGCGCTGCGCTGTCGCGCCTGCCGGAAATGGTGGAAGAACAGCTCGGCGTGACCACCGTGGTCGCCAACCCGCTCGCG
CAGATGACGCTGGGCCCGAAGGTCCAGGCGCATGCGCTGGCGCTGGATGCACCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472