Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L1P14_RS22565 Genome accession   NZ_CP091029
Coordinates   4577687..4578223 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain STEC384     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4572687..4583223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P14_RS22545 soxR 4574415..4574879 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  L1P14_RS22550 soxS 4574965..4575288 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  L1P14_RS22555 pdeC 4575291..4576877 (-) 1587 WP_000019549.1 c-di-GMP phosphodiesterase PdeC -
  L1P14_RS22560 yjcB 4577307..4577588 (+) 282 WP_001341690.1 YjcB family protein -
  L1P14_RS22565 ssb 4577687..4578223 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  L1P14_RS22570 uvrA 4578477..4581299 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA -
  L1P14_RS22575 yjbR 4581334..4581690 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  L1P14_RS22580 yjbQ 4581694..4582110 (-) 417 WP_000270372.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  L1P14_RS22585 aphA 4582221..4582934 (-) 714 WP_001307512.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=647281 L1P14_RS22565 WP_000168305.1 4577687..4578223(-) (ssb) [Escherichia coli strain STEC384]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=647281 L1P14_RS22565 WP_000168305.1 4577687..4578223(-) (ssb) [Escherichia coli strain STEC384]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGTAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489