Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   L0B52_RS03890 Genome accession   NZ_CP090975
Coordinates   825034..825414 (-) Length   126 a.a.
NCBI ID   WP_235065235.1    Uniprot ID   -
Organism   Suttonella sp. R2A3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 820034..830414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0B52_RS03870 (L0B52_03870) - 820857..822755 (-) 1899 WP_235065228.1 Hpt domain-containing protein -
  L0B52_RS03875 (L0B52_03875) - 822795..824123 (-) 1329 WP_235065229.1 methyl-accepting chemotaxis protein -
  L0B52_RS03880 (L0B52_03880) - 824135..824656 (-) 522 WP_235065232.1 chemotaxis protein CheW -
  L0B52_RS03885 (L0B52_03885) - 824653..825018 (-) 366 WP_235065234.1 PleD family two-component system response regulator -
  L0B52_RS03890 (L0B52_03890) pilG 825034..825414 (-) 381 WP_235065235.1 PleD family two-component system response regulator Regulator
  L0B52_RS03895 (L0B52_03895) ruvX 825494..825892 (-) 399 WP_235065236.1 Holliday junction resolvase RuvX -
  L0B52_RS03900 (L0B52_03900) trxB 826032..826979 (+) 948 WP_235065237.1 thioredoxin-disulfide reductase -
  L0B52_RS03905 (L0B52_03905) lpdA 827041..828798 (+) 1758 WP_235065238.1 dihydrolipoyl dehydrogenase -
  L0B52_RS03910 (L0B52_03910) - 828896..829504 (-) 609 WP_235065239.1 hypothetical protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14145.34 Da        Isoelectric Point: 8.0265

>NTDB_id=646831 L0B52_RS03890 WP_235065235.1 825034..825414(-) (pilG) [Suttonella sp. R2A3]
MSTENGSVKVLVVDDSTTIRKTAETILKKEGYSVETAEDGFKALSKVVAFKPDIIFLDIMMPRLDGYQVCSVVKSNEHFK
QTPILMLSSKDSIFDKARGRIAGSEFFITKPFSRDQLLQAIDQHVR

Nucleotide


Download         Length: 381 bp        

>NTDB_id=646831 L0B52_RS03890 WP_235065235.1 825034..825414(-) (pilG) [Suttonella sp. R2A3]
GTGTCTACGGAGAACGGGAGCGTGAAGGTCTTGGTGGTTGATGATTCAACTACGATTCGTAAAACGGCAGAAACCATCTT
AAAGAAAGAAGGCTATAGCGTTGAAACGGCTGAGGATGGCTTTAAAGCACTGTCAAAAGTGGTGGCATTTAAGCCCGATA
TCATTTTTCTCGATATCATGATGCCACGCTTAGATGGTTACCAGGTATGTTCGGTGGTTAAGAGTAATGAGCACTTTAAA
CAAACACCGATTTTAATGCTATCAAGCAAAGATAGCATTTTTGACAAAGCACGAGGTCGGATTGCAGGCTCTGAATTTTT
TATTACCAAACCTTTTTCGCGAGATCAATTGCTGCAAGCGATTGATCAGCATGTCCGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

57.983

94.444

0.548
  vicR Streptococcus mutans UA159

46.61

93.651

0.437
  pilH Synechocystis sp. PCC 6803

42.735

92.857

0.397
  micA Streptococcus pneumoniae Cp1015

44.037

86.508

0.381