Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L1P01_RS04985 Genome accession   NZ_CP090973
Coordinates   1121513..1122028 (+) Length   171 a.a.
NCBI ID   WP_012915565.1    Uniprot ID   D2UDJ2
Organism   Xanthomonas albilineans strain Xa04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1116513..1127028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P01_RS04970 murL 1117338..1118693 (+) 1356 WP_012915562.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  L1P01_RS04975 murD 1118674..1120086 (+) 1413 WP_012915563.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  L1P01_RS04980 - 1120225..1121220 (-) 996 WP_012915564.1 polyprenyl synthetase family protein -
  L1P01_RS04985 ssb 1121513..1122028 (+) 516 WP_012915565.1 single-stranded DNA-binding protein Machinery gene
  L1P01_RS04990 - 1122234..1122578 (-) 345 WP_049887168.1 hypothetical protein -
  L1P01_RS04995 - 1122610..1122822 (-) 213 WP_012915567.1 hypothetical protein -
  L1P01_RS05000 - 1123121..1123432 (+) 312 WP_308694602.1 hypothetical protein -
  L1P01_RS05005 - 1123468..1124271 (+) 804 WP_308694603.1 hypothetical protein -
  L1P01_RS05010 - 1124288..1124605 (+) 318 WP_012915569.1 NAD(P) transhydrogenase subunit alpha -
  L1P01_RS05015 - 1124610..1126022 (+) 1413 WP_012915570.1 NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18555.40 Da        Isoelectric Point: 5.3147

>NTDB_id=646798 L1P01_RS04985 WP_012915565.1 1121513..1122028(+) (ssb) [Xanthomonas albilineans strain Xa04]
MARGINKVILVGNLGNDPDTKYTQSGMAITRVSLATTSVRKDRDGNQQERTEWHRVVFFGKLGEIAGEYLRKGSSVYVEG
SLRYDKYTGQDGVEKYSTDIVADEMQMLGGRGEGSGGGGMSGGDRPSRSAPPRQERSDMGGGGQDYAPRRQQPSPSHSAP
MDDFADDDIPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=646798 L1P01_RS04985 WP_012915565.1 1121513..1122028(+) (ssb) [Xanthomonas albilineans strain Xa04]
ATGGCCCGCGGCATCAATAAAGTCATCCTCGTCGGCAATCTCGGCAACGATCCCGACACCAAGTACACCCAGTCCGGCAT
GGCCATCACCCGCGTCAGTCTGGCCACCACCAGCGTGCGCAAGGATCGCGACGGCAACCAGCAGGAGCGCACCGAGTGGC
ATCGTGTGGTGTTTTTCGGGAAACTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGCAGTTCGGTCTACGTCGAAGGT
TCGCTCCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACTCCACCGACATCGTCGCCGATGAGATGCAGAT
GCTCGGCGGCCGTGGCGAAGGTAGCGGGGGTGGGGGCATGAGTGGCGGCGACCGTCCGTCGCGTTCGGCGCCGCCGCGTC
AGGAGCGTTCCGACATGGGCGGCGGCGGGCAGGACTACGCCCCGCGGCGCCAGCAGCCGTCGCCGTCGCATTCCGCACCG
ATGGATGATTTCGCGGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D2UDJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

47.458

100

0.491
  ssb Neisseria gonorrhoeae MS11

46.893

100

0.485
  ssb Vibrio cholerae strain A1552

42.857

100

0.456
  ssb Glaesserella parasuis strain SC1401

42.857

100

0.456