Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L1F30_RS14620 Genome accession   NZ_CP090959
Coordinates   3339527..3340072 (-) Length   181 a.a.
NCBI ID   WP_253357246.1    Uniprot ID   -
Organism   Simiduia sp. 21SJ11W-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3334527..3345072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F30_RS14600 (L1F30_14600) tviB 3334754..3336028 (+) 1275 WP_253357238.1 Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB -
  L1F30_RS14605 (L1F30_14605) - 3336075..3337082 (+) 1008 WP_253357240.1 NAD-dependent epimerase -
  L1F30_RS14610 (L1F30_14610) - 3337098..3338003 (+) 906 WP_253357242.1 XrtA system polysaccharide deacetylase -
  L1F30_RS14615 (L1F30_14615) - 3338000..3339409 (-) 1410 WP_253357244.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  L1F30_RS14620 (L1F30_14620) ssb 3339527..3340072 (-) 546 WP_253357246.1 single-stranded DNA-binding protein Machinery gene
  L1F30_RS14625 (L1F30_14625) - 3340158..3341504 (-) 1347 WP_253357248.1 MFS transporter -
  L1F30_RS14630 (L1F30_14630) - 3341781..3342338 (+) 558 WP_253357250.1 hypothetical protein -
  L1F30_RS14635 (L1F30_14635) - 3342729..3343388 (+) 660 WP_253357252.1 LuxR C-terminal-related transcriptional regulator -
  L1F30_RS14640 (L1F30_14640) - 3343388..3343804 (+) 417 WP_253357254.1 CsgE family curli-type amyloid fiber assembly protein -
  L1F30_RS14645 (L1F30_14645) - 3343817..3344227 (+) 411 WP_253357256.1 curli assembly protein CsgF -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20079.87 Da        Isoelectric Point: 4.9658

>NTDB_id=646689 L1F30_RS14620 WP_253357246.1 3339527..3340072(-) (ssb) [Simiduia sp. 21SJ11W-1]
MARGVNKVILVGNLGQDPETKYMPSGGAVTNVSVATSETWKDKNTGQPQERTEWHRVVFFNRLAEIAGEYLKKGSKVYVE
GSLRTRKWQGQDGQDRYTTEIVASEMQMLDSREGGGYSQGGGYDQSFNQAPQQRQQPQQAQQQGGYQQPQQSQQQAPQQS
APQQSAPQAGGFDSFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=646689 L1F30_RS14620 WP_253357246.1 3339527..3340072(-) (ssb) [Simiduia sp. 21SJ11W-1]
ATGGCAAGAGGTGTGAACAAGGTGATTTTGGTGGGTAACCTCGGTCAGGACCCTGAAACAAAATACATGCCCAGCGGTGG
CGCCGTAACCAACGTAAGTGTGGCCACCTCTGAAACCTGGAAAGACAAAAATACCGGTCAGCCCCAGGAGCGTACCGAAT
GGCACCGCGTGGTGTTTTTTAACCGTCTGGCTGAAATCGCCGGCGAGTACCTGAAAAAAGGCAGCAAGGTTTACGTTGAA
GGTTCACTGCGCACCCGCAAGTGGCAGGGGCAAGATGGCCAGGATCGCTACACCACCGAAATTGTAGCCAGCGAGATGCA
AATGCTCGATAGCCGCGAAGGGGGCGGATACAGCCAGGGCGGCGGTTATGATCAAAGCTTCAACCAGGCGCCCCAGCAAC
GCCAGCAGCCTCAGCAGGCGCAGCAGCAGGGTGGGTATCAGCAGCCTCAACAGTCGCAACAACAAGCCCCGCAGCAGTCT
GCACCACAGCAGTCTGCGCCACAGGCCGGTGGTTTCGACAGTTTTGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.979

100

0.602
  ssb Glaesserella parasuis strain SC1401

54.645

100

0.552
  ssb Neisseria gonorrhoeae MS11

50.562

98.343

0.497
  ssb Neisseria meningitidis MC58

50

98.343

0.492