Detailed information NTG0646631

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: L1B16_RS17105
• Genome accession: NZ_CP090954
• Coordinates: 3979041..3980099 (-)
• Length: 352 a.a.
• NCBI ID: WP_039423791.1
• Uniprot ID: -
• Organism: Xanthomonas arboricola pv. pruni strain Xcp1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3974041..3985099

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1B16_RS17080 (L1B16_05735)	-	3974136..3975155 (-)	1020	WP_043088175.1	MoxR family ATPase	-
L1B16_RS17085 (L1B16_05740)	-	3975323..3977056 (-)	1734	Protein_3344	type IV pilus secretin PilQ family protein	-
L1B16_RS17090 (L1B16_05745)	-	3977076..3977609 (-)	534	WP_039512381.1	pilus assembly protein PilP	-
L1B16_RS17095 (L1B16_05750)	-	3977606..3978271 (-)	666	WP_039512382.1	type 4a pilus biogenesis protein PilO	-
L1B16_RS17100 (L1B16_05755)	-	3978268..3979041 (-)	774	WP_039512383.1	PilN domain-containing protein	-
L1B16_RS17105 (L1B16_05760)	comM	3979041..3980099 (-)	1059	WP_039423791.1	pilus assembly protein PilM	Machinery gene
L1B16_RS17110 (L1B16_05765)	-	3980218..3982731 (+)	2514	WP_224096730.1	penicillin-binding protein 1A	-
L1B16_RS17115 (L1B16_05770)	-	3982946..3983596 (+)	651	WP_224096711.1	hypothetical protein	-
L1B16_RS17120 (L1B16_05775)	-	3983699..3984988 (-)	1290	WP_024938127.1	citrate synthase	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37622.21 Da
• Isoelectric Point: 4.3924

>NTDB_id=646631 L1B16_RS17105 WP_039423791.1 3979041..3980099(-) (comM) [Xanthomonas arboricola pv. pruni strain Xcp1]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=646631 L1B16_RS17105 WP_039423791.1 3979041..3980099(-) (comM) [Xanthomonas arboricola pv. pruni strain Xcp1]
GTGGGGCTTCTACCCAAGAGTCAATCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCTTGCAGCTGTC
GCGCAGCGGGAACCGTTTCCGCGTGGAGCATTACGCGGTGGAACCGTTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTCGAGGCGGTTGGCGAAGCGATTCGTCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAATGCCGCAGCTGCG
GTGGCCGGGTCGGCGGTGATCACCAAGCTGATTCCGATGCCGGCCGATCTGGACGACAGCGATCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTCAATCTCGACTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCCGCGCTGGAACTCGGT
GGCCTGACCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTTGCCCTGGTCGCCAGCGAGTTGCCGGT
GGCCGCCGATGCGGTGGTTGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCCGGTCGCAGCC
TGTACAGCCGCGAGCAGGTCTTCGGCGGCAAGCAGCTCACCGACGAGGTGATGCGCCGTTACGGGTTGACCTACGAGGAG
GCCGGCCTAGCCAAGCGTCAGGGCGGCTTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAGGCGACGGT
GCAGCAGATCAGCCGTTTGCTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GCTGCGCTGCGCTGTCGCGCCTGCCGGAAATGGTGGAAGAACAGCTCGGCGTGACCACCGTGGTCGCCAACCCGCTCGCG
CAGATGACGCTGGGCCCGAAGGTCCAGGCGCATGCGCTGGCGCTGGATGCACCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter baylyi ADP1	51.282	99.716	0.511
comM	Acinetobacter nosocomialis M2	51.136	100	0.511
pilM	Acinetobacter baumannii D1279779	50.852	100	0.509
pilM	Legionella pneumophila strain ERS1305867	47.293	99.716	0.472