Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS33_RS27215 Genome accession   NZ_CP107819
Coordinates   6105253..6105885 (-) Length   210 a.a.
NCBI ID   WP_330333028.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00536     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6100253..6110885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS33_RS27205 (OHS33_27205) - 6101304..6102065 (+) 762 WP_330333026.1 alpha/beta fold hydrolase -
  OHS33_RS27210 (OHS33_27210) - 6102317..6105193 (+) 2877 WP_330333027.1 AAA family ATPase -
  OHS33_RS27215 (OHS33_27215) vraR 6105253..6105885 (-) 633 WP_330333028.1 response regulator transcription factor Regulator
  OHS33_RS27220 (OHS33_27220) - 6105875..6107125 (-) 1251 WP_330333029.1 sensor histidine kinase -
  OHS33_RS27225 (OHS33_27225) - 6107360..6107908 (+) 549 WP_330333030.1 hypothetical protein -
  OHS33_RS27230 (OHS33_27230) - 6107968..6108468 (+) 501 WP_330333031.1 PH domain-containing protein -
  OHS33_RS27235 (OHS33_27235) - 6108465..6110009 (+) 1545 WP_330333032.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22199.72 Da        Isoelectric Point: 6.2573

>NTDB_id=646618 OHS33_RS27215 WP_330333028.1 6105253..6105885(-) (vraR) [Streptomyces sp. NBC_00536]
MSADKTIGVMLVDDHPVVREGLSSMLRSADGVSVVGQADSGEEAIAMVTRLAPDIVLLDLQMGGMDGVETTGHLLRAAPA
TKVVIVTTYESDTDILRAVEAGAAGYLLKGSSRDELVQAVKAAARGETVLTPSLAPKLFRARVVEPPALSDREREVLQLV
SLGLTNADIGRQLFISEATVKTHLLRSFKKLSVSDRTAAVIKALKLGLLS

Nucleotide


Download         Length: 633 bp        

>NTDB_id=646618 OHS33_RS27215 WP_330333028.1 6105253..6105885(-) (vraR) [Streptomyces sp. NBC_00536]
ATGAGCGCTGACAAGACGATCGGCGTGATGCTGGTCGACGACCATCCGGTCGTACGGGAGGGGCTGAGCTCGATGCTGCG
GTCCGCCGACGGCGTGAGCGTCGTCGGGCAGGCCGACTCGGGCGAGGAGGCGATCGCGATGGTCACCAGACTGGCTCCCG
ACATCGTGCTGCTCGACCTCCAGATGGGCGGGATGGACGGGGTGGAGACCACCGGCCACCTGCTGCGCGCCGCTCCGGCC
ACCAAGGTGGTGATCGTGACGACGTACGAGAGCGACACCGACATCCTGCGGGCCGTGGAGGCGGGCGCGGCGGGCTACCT
GCTCAAGGGCAGCTCACGCGACGAACTGGTGCAGGCGGTGAAGGCGGCGGCCCGCGGTGAGACGGTCCTGACGCCGTCGC
TGGCCCCCAAGCTGTTCCGGGCCCGGGTGGTGGAGCCGCCCGCGTTGTCGGACCGTGAGCGCGAGGTGCTCCAGCTGGTC
AGCCTCGGGCTGACCAACGCGGACATCGGCCGTCAGCTGTTCATCAGCGAGGCGACGGTGAAGACGCATCTGCTGCGGTC
GTTCAAGAAGCTGTCGGTCTCGGACCGGACGGCCGCGGTGATCAAGGCGCTGAAGCTCGGCCTGCTGTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(9-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.904

99.048

0.395
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.381
  letA Legionella pneumophila str. Paris

37.255

97.143

0.362
  letA Legionella pneumophila strain ERS1305867

37.255

97.143

0.362