Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L1K66_RS05350 Genome accession   NZ_CP090949
Coordinates   1121099..1121620 (+) Length   173 a.a.
NCBI ID   WP_252259949.1    Uniprot ID   -
Organism   Erythrobacter aurantius strain C5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1116099..1126620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1K66_RS05315 - 1116565..1117044 (-) 480 WP_252259942.1 hypothetical protein -
  L1K66_RS05320 - 1117093..1117665 (-) 573 WP_252259943.1 DUF4402 domain-containing protein -
  L1K66_RS05325 - 1117734..1118456 (-) 723 WP_252259944.1 M48 family metallopeptidase -
  L1K66_RS05330 - 1118453..1118941 (-) 489 WP_252259945.1 YcgN family cysteine cluster protein -
  L1K66_RS05335 - 1118929..1119564 (-) 636 WP_252259946.1 SCO family protein -
  L1K66_RS05340 - 1119631..1120305 (+) 675 WP_252259947.1 ankyrin repeat domain-containing protein -
  L1K66_RS05345 - 1120307..1120993 (+) 687 WP_252259948.1 COQ9 family protein -
  L1K66_RS05350 ssb 1121099..1121620 (+) 522 WP_252259949.1 single-stranded DNA-binding protein Machinery gene
  L1K66_RS05355 - 1121680..1122069 (+) 390 WP_252259950.1 hypothetical protein -
  L1K66_RS05360 - 1122141..1122680 (-) 540 WP_252259951.1 DUF177 domain-containing protein -
  L1K66_RS05365 - 1122677..1123204 (-) 528 WP_252259952.1 ubiquinol-cytochrome C chaperone family protein -
  L1K66_RS05370 - 1123466..1123960 (+) 495 WP_051699501.1 outer membrane protein assembly factor BamE -
  L1K66_RS05375 hslV 1124014..1124574 (+) 561 WP_034951969.1 ATP-dependent protease subunit HslV -
  L1K66_RS05380 hslU 1124592..1125893 (+) 1302 WP_034951972.1 ATP-dependent protease ATPase subunit HslU -
  L1K66_RS05385 - 1125975..1126370 (+) 396 WP_252259953.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 17698.28 Da        Isoelectric Point: 5.2437

>NTDB_id=646604 L1K66_RS05350 WP_252259949.1 1121099..1121620(+) (ssb) [Erythrobacter aurantius strain C5]
MAGSLNKVMLIGNLGADPEVRTFQNGGKVCNLRVATTETWKDRNSGERQERTEWHTVAIFNEGLAGVAERYLKKGSKVYI
EGQLQTRKWQDQNGNDRYSTEVVLRGPNSVMTMLDSAGGGGGGMGGGGGRSGGGYSGGGAGGAGGGSGGGWNQGGGSGSS
GGGYDDLDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=646604 L1K66_RS05350 WP_252259949.1 1121099..1121620(+) (ssb) [Erythrobacter aurantius strain C5]
ATGGCGGGTTCGCTCAACAAGGTCATGCTGATCGGCAATCTCGGGGCGGATCCCGAAGTGCGCACGTTCCAGAACGGCGG
CAAGGTCTGCAACCTGCGCGTCGCCACGACCGAGACGTGGAAAGATCGCAACTCGGGTGAGCGGCAGGAACGCACCGAAT
GGCACACCGTCGCGATCTTCAACGAAGGTCTGGCAGGCGTCGCCGAACGCTATCTGAAGAAAGGCAGCAAGGTCTATATC
GAAGGCCAGTTGCAAACCCGCAAATGGCAGGACCAGAACGGCAATGACCGGTATTCGACCGAAGTCGTTTTGCGCGGCCC
CAACTCCGTGATGACCATGCTCGACAGCGCCGGAGGCGGCGGTGGCGGCATGGGTGGCGGCGGCGGCCGTTCGGGTGGTG
GCTATAGCGGTGGCGGCGCTGGCGGCGCTGGCGGCGGTTCAGGCGGTGGCTGGAATCAGGGCGGCGGAAGCGGCAGCTCG
GGCGGCGGCTACGACGATCTTGACGACGATATCCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.133

100

0.491
  ssb Glaesserella parasuis strain SC1401

45.161

100

0.486
  ssb Neisseria meningitidis MC58

40.782

100

0.422
  ssb Neisseria gonorrhoeae MS11

40.223

100

0.416