Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OG266_RS12190 Genome accession   NZ_CP107799
Coordinates   2824475..2826100 (-) Length   541 a.a.
NCBI ID   WP_326720427.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00554 strain NBC 00554     
Function   promote branch migration; interact with DprA; integration of tDNA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2819475..2831100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG266_RS12170 (OG266_12160) - 2820473..2821114 (+) 642 WP_371545461.1 peptidoglycan DD-metalloendopeptidase family protein -
  OG266_RS12175 (OG266_12165) - 2821342..2821899 (-) 558 WP_266475062.1 TetR/AcrR family transcriptional regulator -
  OG266_RS12180 (OG266_12170) whiG 2822219..2823061 (-) 843 WP_266474600.1 RNA polymerase sigma factor WhiG -
  OG266_RS12185 (OG266_12175) dprA 2823333..2824478 (-) 1146 WP_371545463.1 DNA-processing protein DprA -
  OG266_RS12190 (OG266_12180) comM 2824475..2826100 (-) 1626 WP_326720427.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OG266_RS12195 (OG266_12185) - 2826100..2826474 (-) 375 WP_266474604.1 YraN family protein -
  OG266_RS12200 (OG266_12190) - 2826626..2826934 (-) 309 WP_003965949.1 DUF2469 domain-containing protein -
  OG266_RS12205 (OG266_12195) - 2826990..2827466 (-) 477 WP_266475063.1 NUDIX hydrolase -
  OG266_RS12210 (OG266_12200) lepB 2827531..2828301 (-) 771 WP_266474605.1 signal peptidase I -
  OG266_RS12215 (OG266_12205) lepB 2828470..2829399 (-) 930 WP_266474607.1 signal peptidase I -
  OG266_RS12220 (OG266_12210) lepB 2829290..2830375 (-) 1086 Protein_2429 signal peptidase I -
  OG266_RS12225 (OG266_12215) lepB 2830368..2831084 (-) 717 WP_266474609.1 signal peptidase I -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 56412.87 Da        Isoelectric Point: 6.1451

>NTDB_id=646413 OG266_RS12190 WP_326720427.1 2824475..2826100(-) (comM) [Streptomyces sp. NBC_00554 strain NBC 00554]
MGFARTCSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLTESKDRVRAAVVNSGASWPQKKLTVGLSPASVPKGGSG
FDLAVACAVLGASERIDPRVLADIVMIGELGLDGRVRPVRGVLPAVLAAADAGYEQVVVPECAAAEASLVPGVSVLGVRS
LRQLIAVLTDEPVPEEDPDEQGRPDPLLAGLRMPGTGEATGLCGMAVPEHDQGHDLADVVGQMSARTAMEVAAAGGHHVF
LQGPPGAGKTMLAERMPSLLPRLSRQESLEVTAIHSVAGLLPPGKPMVDIPPYCAPHHSATMQSLVGGGKGLARPGAVSL
SHRGVLFLDEAPEFSSFVLDALRQPLEAGHVVIARSAGVVRFPAKFLMVLAANPCPCGRFSVANDMCECPPSSVRRYQAR
LSGPLIDRIDLRVEVEPVTRAELTAVGAVGESTRTVADRVSAARERSAARLAGTPWHTNSEVPGRELRSRWQALPGAMDD
AERGLERGVLTARGLDRVLRVAWTVADLSGHDRPDAGDVALALQLRTGVPRGVPMMIGSPA

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=646413 OG266_RS12190 WP_326720427.1 2824475..2826100(-) (comM) [Streptomyces sp. NBC_00554 strain NBC 00554]
ATGGGATTCGCCCGTACGTGCTCAGTGGCCCTGGTCGGCGTCGAGGGCGTCGTCGTGGAGGTCCAGGCGGACCTGGAACC
CGGTGTCGCGGCGTTCACCCTGGTGGGACTGCCGGACAAGAGCCTGACGGAGAGCAAGGACCGGGTCAGGGCCGCCGTGG
TGAATTCCGGGGCGTCGTGGCCGCAGAAGAAGCTGACGGTCGGACTGAGCCCGGCTTCTGTCCCCAAGGGCGGCTCCGGG
TTCGACCTCGCGGTTGCCTGCGCCGTGCTCGGTGCGTCCGAGCGGATCGATCCGCGGGTGCTCGCCGACATCGTGATGAT
CGGCGAGCTGGGGCTCGACGGACGGGTCCGGCCGGTGCGCGGTGTCCTGCCGGCGGTCCTGGCCGCGGCCGACGCGGGCT
ATGAGCAGGTGGTGGTGCCGGAGTGCGCTGCCGCCGAGGCCTCGCTCGTGCCGGGGGTCTCGGTGCTCGGGGTCCGCAGC
CTGCGCCAGCTGATCGCCGTGCTCACGGACGAACCGGTGCCCGAGGAGGATCCGGACGAGCAGGGGCGGCCGGATCCGCT
GCTGGCGGGACTGCGTATGCCGGGCACGGGAGAGGCGACCGGCCTGTGCGGCATGGCTGTGCCGGAACACGACCAGGGGC
ACGACCTCGCCGACGTGGTCGGCCAGATGTCGGCGCGCACCGCCATGGAGGTCGCCGCCGCCGGAGGGCACCACGTCTTT
CTTCAAGGGCCGCCCGGCGCGGGCAAGACCATGCTCGCCGAGCGGATGCCTTCGCTGCTGCCGCGCCTCAGCAGGCAGGA
ATCCCTGGAGGTGACGGCGATCCACTCCGTGGCGGGTCTGCTGCCGCCGGGCAAGCCGATGGTCGACATCCCGCCGTACT
GCGCGCCCCATCACTCGGCGACGATGCAGTCGCTCGTCGGCGGCGGCAAAGGGCTTGCCCGGCCCGGCGCGGTGTCCTTG
TCGCATCGAGGTGTGCTCTTTCTGGACGAGGCGCCGGAATTCAGCAGCTTCGTGCTCGATGCCCTGCGGCAGCCCTTGGA
GGCGGGGCATGTCGTGATCGCTCGCAGCGCCGGTGTCGTGCGTTTTCCGGCGAAGTTCCTGATGGTCCTCGCGGCCAACC
CGTGTCCTTGCGGGCGCTTCAGCGTGGCGAACGACATGTGCGAGTGCCCGCCCTCTTCCGTCCGCCGGTATCAGGCCAGG
CTCTCCGGGCCGCTCATCGACAGGATCGATCTGCGGGTCGAGGTCGAGCCGGTCACCCGGGCCGAACTGACTGCGGTCGG
TGCCGTCGGCGAGTCGACACGGACGGTGGCCGACCGGGTGAGTGCCGCCCGTGAGCGTTCCGCAGCGCGGTTGGCCGGCA
CTCCGTGGCACACGAACAGCGAGGTGCCGGGACGCGAACTGCGCAGTCGCTGGCAGGCACTGCCGGGAGCGATGGACGAC
GCCGAGCGCGGGCTGGAACGAGGCGTGCTGACCGCGCGCGGCCTGGACCGGGTACTCCGCGTCGCCTGGACGGTGGCCGA
CCTCTCGGGACACGACAGGCCTGACGCCGGGGATGTGGCCCTGGCCCTGCAACTGCGCACCGGGGTCCCCCGAGGGGTGC
CGATGATGATCGGTTCACCGGCATGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-422)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40

94.27

0.377
  comM Vibrio cholerae strain A1552

40

94.27

0.377
  comM Acinetobacter baylyi ADP1

38.52

97.412

0.375
  comM Vibrio campbellii strain DS40M4

38.593

97.227

0.375
  comM Legionella pneumophila strain ERS1305867

37.594

98.336

0.37
  comM Legionella pneumophila str. Paris

37.594

98.336

0.37
  comM Haemophilus influenzae Rd KW20

36.178

99.63

0.36