Detailed information NTG0646372

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: L1E13_RS04250
• Genome accession: NZ_CP090909
• Coordinates: 875342..875917 (+)
• Length: 191 a.a.
• NCBI ID: WP_234979244.1
• Uniprot ID: -
• Organism: Enterobacter hormaechei strain M1
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 870342..880917

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1E13_RS04210 (L1E13_04210)	-	870931..871416 (+)	486	WP_063863195.1	lipoprotein	-
L1E13_RS04215 (L1E13_04215)	-	872227..872541 (+)	315	WP_063863196.1	hypothetical protein	-
L1E13_RS04220 (L1E13_04220)	-	872693..872851 (+)	159	WP_234979226.1	hypothetical protein	-
L1E13_RS04225 (L1E13_04225)	-	872848..873054 (+)	207	WP_001752704.1	cell division protein FtsZ	-
L1E13_RS04230 (L1E13_04230)	-	873131..874102 (+)	972	WP_234979242.1	hypothetical protein	-
L1E13_RS04235 (L1E13_04235)	-	874111..874308 (+)	198	WP_032667076.1	hypothetical protein	-
L1E13_RS04240 (L1E13_04240)	-	874305..874463 (+)	159	WP_164078420.1	hypothetical protein	-
L1E13_RS04245 (L1E13_04245)	-	874475..875341 (+)	867	WP_234979243.1	ATP-binding protein	-
L1E13_RS04250 (L1E13_04250)	ssb	875342..875917 (+)	576	WP_234979244.1	single-stranded DNA-binding protein SSB1	Machinery gene
L1E13_RS04255 (L1E13_04255)	-	875926..876474 (+)	549	WP_234979245.1	3'-5' exonuclease	-
L1E13_RS04260 (L1E13_04260)	-	876495..876824 (+)	330	WP_032667080.1	hypothetical protein	-
L1E13_RS04265 (L1E13_04265)	-	876824..876976 (+)	153	WP_234979435.1	DUF1317 family protein	-
L1E13_RS04270 (L1E13_04270)	-	876973..877632 (+)	660	WP_234979246.1	MT-A70 family methyltransferase	-
L1E13_RS04275 (L1E13_04275)	-	877629..878399 (+)	771	WP_234979247.1	dcm methylase	-
L1E13_RS04280 (L1E13_04280)	-	878396..878614 (+)	219	WP_234979248.1	hypothetical protein	-
L1E13_RS04285 (L1E13_04285)	-	878611..879222 (+)	612	WP_234979249.1	hypothetical protein	-
L1E13_RS04290 (L1E13_04290)	-	879219..879410 (+)	192	WP_234979250.1	DUF1382 family protein	-
L1E13_RS04295 (L1E13_04295)	-	879502..879723 (+)	222	WP_234979251.1	TraR/DksA family transcriptional regulator	-
L1E13_RS04300 (L1E13_04300)	-	879885..880130 (+)	246	WP_234979252.1	hypothetical protein	-
L1E13_RS04305 (L1E13_04305)	-	880484..880756 (+)	273	WP_023300430.1	excisionase	-

Sequence

Protein

• Length: 191 a.a.
• Molecular weight: 20553.94 Da
• Isoelectric Point: 6.2390

>NTDB_id=646372 L1E13_RS04250 WP_234979244.1 875342..875917(+) (ssb) [Enterobacter hormaechei strain M1]
MASKGVNKVILVGNLGQDPEVRYLPSGGAVCSVTLATSESWRDKATGELKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAPEGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQWAP
APSNEPPMDFDDDIPFAPVTLPFPRHAIHAI

Nucleotide

• Length: 576 bp

>NTDB_id=646372 L1E13_RS04250 WP_234979244.1 875342..875917(+) (ssb) [Enterobacter hormaechei strain M1]
ATGGCTAGCAAAGGCGTAAACAAAGTGATCCTCGTCGGTAACCTCGGGCAAGACCCCGAGGTCCGTTATCTTCCATCCGG
CGGCGCAGTGTGTAGCGTGACACTGGCAACTTCGGAGTCATGGCGAGATAAAGCCACCGGCGAGCTTAAAGAGCAAACGG
AATGGCACCGCGTCGTTCTGTTCGGAAAGTTGGCTGAGGTGGCCGGGGAATACCTGCGCAAGGGCTCTCAGGTTTATATC
GAGGGCCAACTGCGTACACGCAAATGGACAGATCAGGCTGGCGTGGAGAAGTACACCACAGAGGTAGTGGTAAACGTCGG
CGGAACAATGCAGATGTTGGGTGGCCGTCAGGGCGGTGGCGCACCGGAAGGTGGCGGTCAGAACCAGCAGCAGGGTGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCACAGTCACGTCCGCAGCAGCAGTGGGCACCA
GCCCCATCTAACGAACCACCAATGGATTTCGACGACGATATTCCGTTTGCTCCTGTAACTCTGCCCTTCCCTCGCCATGC
TATTCACGCAATTTAA

Domains

Predicted by InterProScan.

• Single-strand binding protein family (SSB) (6-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	72.222	94.241	0.681
ssb	Glaesserella parasuis strain SC1401	55.676	96.859	0.539
ssb	Neisseria meningitidis MC58	46.067	93.194	0.429
ssb	Neisseria gonorrhoeae MS11	46.067	93.194	0.429