Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L0U97_RS14320 Genome accession   NZ_CP090890
Coordinates   3031044..3031628 (-) Length   194 a.a.
NCBI ID   WP_234856594.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCO-9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3026044..3036628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U97_RS14305 gabT 3026078..3027370 (-) 1293 WP_004964859.1 4-aminobutyrate--2-oxoglutarate transaminase -
  L0U97_RS14310 - 3027525..3029024 (+) 1500 WP_004909822.1 PLP-dependent aminotransferase family protein -
  L0U97_RS14315 - 3029096..3030538 (-) 1443 WP_075696012.1 amino acid permease -
  L0U97_RS14320 ssb 3031044..3031628 (-) 585 WP_234856594.1 single-stranded DNA-binding protein Machinery gene
  L0U97_RS14325 - 3031681..3033045 (-) 1365 WP_005403380.1 MFS transporter -
  L0U97_RS14330 - 3033182..3034264 (-) 1083 WP_004909842.1 DUF475 domain-containing protein -
  L0U97_RS14335 tenA 3034439..3035113 (+) 675 WP_004951380.1 thiaminase II -
  L0U97_RS14340 - 3035264..3035620 (-) 357 WP_234856595.1 DUF1304 domain-containing protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21271.99 Da        Isoelectric Point: 6.7308

>NTDB_id=646214 L0U97_RS14320 WP_234856594.1 3031044..3031628(-) (ssb) [Acinetobacter junii strain WCO-9]
MRGVNKVILVGTLGKDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYSTEIRGDQMQMLDSRQQGGEHQAGNDFNQPRFNNNQGGGYQNTGYNNNQNGYGQGGGFGGGNQS
NYAGSPQAGNGFNTPKAAPQPAAAPADLDDDLPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=646214 L0U97_RS14320 WP_234856594.1 3031044..3031628(-) (ssb) [Acinetobacter junii strain WCO-9]
ATGCGTGGTGTGAATAAAGTTATTTTAGTCGGTACTTTGGGTAAAGATCCTGAGACAAAAACCTTTCCAAATGGTGGATC
ACTGACCCAATTTTCGATTGCAACAAGTGAATCGTGGACAGATAAAAATACAGGCGAACGAAAAGAACAAACAGAATGGC
ATCGTATCGTATTGCATAACCGTCTAGGTGAAATTGCACAGCAATACTTACGTAAAGGTTCGAAAGTTTATATCGAAGGT
TCATTGCGTACGCGCCAATGGACAGACCAAAATGGTCAAGAGCGTTACAGCACCGAAATTCGTGGTGACCAAATGCAAAT
GCTCGATTCTCGCCAGCAAGGTGGTGAGCATCAAGCGGGTAATGATTTTAACCAACCGCGTTTTAACAACAATCAAGGCG
GTGGCTACCAAAATACAGGCTATAACAACAACCAAAATGGTTATGGTCAAGGTGGCGGTTTTGGTGGTGGAAATCAGAGC
AATTATGCAGGCAGTCCGCAAGCAGGTAATGGTTTTAATACACCAAAAGCCGCACCTCAACCTGCTGCTGCTCCAGCTGA
CTTAGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.5

100

0.531
  ssb Vibrio cholerae strain A1552

44.67

100

0.454
  ssb Neisseria meningitidis MC58

40.104

98.969

0.397
  ssb Neisseria gonorrhoeae MS11

39.583

98.969

0.392