Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   SPYOHK_RS01210 Genome accession   NZ_AFRY01000001
Coordinates   1636014..1636700 (-) Length   228 a.a.
NCBI ID   WP_002991052.1    Uniprot ID   -
Organism   Streptococcus pyogenes HKU QMH11M0907901     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1631014..1641700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYOHK_RS01230 (SPYOHK_08085) dnaI 1631735..1632637 (-) 903 WP_002991016.1 primosomal protein DnaI -
  SPYOHK_RS01225 (SPYOHK_08090) - 1632638..1633813 (-) 1176 WP_002991019.1 replication initiation and membrane attachment family protein -
  SPYOHK_RS01220 (SPYOHK_08095) nrdR 1633797..1634291 (-) 495 WP_002985941.1 transcriptional regulator NrdR -
  SPYOHK_RS01215 (SPYOHK_08100) covS 1634506..1636008 (-) 1503 WP_002991036.1 two-component system sensor histidine kinase CovS -
  SPYOHK_RS01210 (SPYOHK_08105) covR 1636014..1636700 (-) 687 WP_002991052.1 two-component system response regulator CovR Regulator
  SPYOHK_RS01205 (SPYOHK_08110) - 1636967..1637500 (-) 534 WP_011054200.1 YceD family protein -
  SPYOHK_RS01200 (SPYOHK_08115) htpX 1637734..1638630 (-) 897 WP_002985953.1 zinc metalloprotease HtpX -
  SPYOHK_RS01195 (SPYOHK_08120) - 1638677..1639234 (-) 558 WP_002985956.1 LemA family protein -
  SPYOHK_RS01190 (SPYOHK_08125) rsmG 1639384..1640097 (+) 714 WP_002991057.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  SPYOHK_RS01185 (SPYOHK_08130) ktrB 1640182..1641558 (+) 1377 WP_032459750.1 potassium uptake transporter channel subunit KtrB -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 26618.70 Da        Isoelectric Point: 4.6586

>NTDB_id=64614 SPYOHK_RS01210 WP_002991052.1 1636014..1636700(-) (covR) [Streptococcus pyogenes HKU QMH11M0907901]
MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMDGFEVTRRLQTEKTTYIMMMT
ARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRRQDIESEKKVPSQGIYRDLVLNPQNRSVNRGDDEISLTKREY
DLLNILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKIDIPGKESYIQTVRGMGYVIREK

Nucleotide


Download         Length: 687 bp        

>NTDB_id=64614 SPYOHK_RS01210 WP_002991052.1 1636014..1636700(-) (covR) [Streptococcus pyogenes HKU QMH11M0907901]
ATGACAAAGAAGATTTTAATTATTGAAGATGAAAAGAATCTGGCTAGATTCGTTTCTCTTGAGCTGCAACATGAGGGTTA
TGAAGTCATTGTTGAGGTCAATGGTCGTGAAGGGTTAGAAACTGCTTTGGAAAAAGAGTTTGATTTAATCCTGCTTGACT
TAATGTTACCAGAGATGGATGGTTTTGAAGTGACCCGTCGTTTGCAAACCGAAAAAACAACGTATATCATGATGATGACT
GCGCGTGATTCTATTATGGATGTGGTTGCAGGTTTAGACCGCGGTGCAGACGACTATATTGTTAAACCGTTTGCCATTGA
AGAACTACTTGCCCGTATTCGTGCTATTTTCCGCCGTCAAGATATTGAATCTGAGAAGAAAGTGCCTAGTCAAGGCATTT
ATCGAGATCTAGTTTTAAATCCACAAAACCGTTCAGTTAATCGTGGCGACGATGAGATTTCTCTCACTAAACGTGAATAT
GATTTGCTTAATATTTTGATGACTAATATGAATCGTGTCATGACACGTGAAGAATTATTGTCAAATGTTTGGAAATATGA
TGAAGCTGTTGAGACTAATGTTGTAGATGTCTATATTCGTTATCTCCGCGGCAAAATTGACATTCCAGGCAAGGAATCTT
ATATCCAAACAGTGCGTGGCATGGGATACGTTATTCGTGAGAAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

82.096

100

0.825
  covR Lactococcus lactis subsp. lactis strain DGCC12653

66.96

99.561

0.667
  vicR Streptococcus mutans UA159

43.966

100

0.447
  micA Streptococcus pneumoniae Cp1015

42.174

100

0.425

Multiple sequence alignment