Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG734_RS33525 Genome accession   NZ_CP107780
Coordinates   7696083..7698017 (-) Length   644 a.a.
NCBI ID   WP_330291172.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00576     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7691083..7703017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG734_RS33510 (OG734_33550) - 7692726..7693718 (-) 993 WP_330291169.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  OG734_RS33515 (OG734_33555) - 7693715..7694392 (-) 678 WP_330291170.1 hypothetical protein -
  OG734_RS33520 (OG734_33560) - 7694558..7695946 (+) 1389 WP_330291171.1 RNA polymerase sigma factor -
  OG734_RS33525 (OG734_33565) rcrQ 7696083..7698017 (-) 1935 WP_330291172.1 ABC transporter ATP-binding protein Regulator
  OG734_RS33530 (OG734_33570) rcrP 7698017..7699750 (-) 1734 WP_330291173.1 ABC transporter ATP-binding protein Regulator
  OG734_RS33535 (OG734_33575) - 7699934..7701394 (-) 1461 WP_330293889.1 FGGY family carbohydrate kinase -
  OG734_RS33540 (OG734_33580) - 7701524..7701829 (-) 306 WP_330291174.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 644 a.a.        Molecular weight: 70015.40 Da        Isoelectric Point: 5.2145

>NTDB_id=646060 OG734_RS33525 WP_330291172.1 7696083..7698017(-) (rcrQ) [Streptomyces sp. NBC_00576]
MAGPMGRMMAGGGPDQHSLDFKESGKRLLSQFRPERATMYVMLLAVFVSVSLSVVGPKILGRATDLVFSGIIGRQFESGA
SKAEVLAAMRRQGRNGMADMLSGTDFTPGKGIDFDAVGEVLGLALVVFVFAGLLMLVATRLVNRAVNRTVYRMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPLSFYIATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHNLVKVFGRQDESAQQFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNINYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQQADPVPGVRPEELRGLVSLE
HVSFRYEPEKPLIEDLSLAVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIASMSRDELRGGIGMVLQDT
WLFGGSIAENIAYGAAGEREVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVL
DEATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGAHEELLGADGAYARLYKAQFAEAV
AEVE

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=646060 OG734_RS33525 WP_330291172.1 7696083..7698017(-) (rcrQ) [Streptomyces sp. NBC_00576]
ATGGCCGGGCCCATGGGGCGCATGATGGCCGGAGGCGGCCCCGACCAGCACTCGCTGGACTTCAAGGAGTCCGGCAAACG
GCTCCTCTCCCAGTTCAGGCCCGAACGGGCCACGATGTACGTGATGCTGCTCGCGGTGTTCGTGAGCGTGAGCCTGTCGG
TGGTGGGCCCGAAGATCCTGGGGCGGGCGACCGACCTGGTCTTCTCCGGCATCATCGGACGACAGTTCGAGAGCGGTGCC
TCGAAGGCCGAGGTCCTCGCCGCCATGCGCAGGCAAGGCCGCAACGGCATGGCCGACATGCTCTCCGGTACGGACTTCAC
GCCGGGCAAGGGGATCGACTTCGACGCGGTGGGCGAGGTGCTGGGGCTCGCTCTGGTGGTGTTCGTGTTCGCCGGGCTGC
TGATGCTGGTGGCCACGCGGCTGGTGAACCGGGCGGTCAACCGGACCGTGTACCGGATGCGCGAGGACCTGCAGGCGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGGCAGCGGGGTGAGGTCCTGTCCCGCGCGACGAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGGCAGCTCATCAACTCGCTGCTCACGATCATCGGCGTGCTGGCGATGATGT
TCTGGGTGTCCTGGCTGCTGGCGCTGGTCGCGCTGGTGACCGTACCGCTGTCGTTCTACATCGCCACGCGCGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGGACCACCGGCAAGCTGAACGCCCACATCGAGGAGATGTACACCGGGCA
CAATCTCGTGAAGGTGTTCGGGCGGCAGGACGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCCCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTATCGAACATCAACTACGTGCTGGTGGCC
GTGGTGGGCGGGCTGCGGGTCGCTTCGGGTGCGCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGTCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGTGTGGCTTCGGCCGAGCGGATCTTCGAAC
TGCTGGACGCGGAGGAGCAGCAGGCCGATCCGGTGCCCGGCGTACGGCCCGAGGAACTGCGGGGGCTGGTCTCTCTGGAG
CACGTGTCGTTCCGGTACGAGCCGGAGAAGCCGCTGATCGAGGATCTGTCGCTGGCGGTGGAGCCGGGTCACACGGTCGC
GATCGTCGGGCCCACCGGGGCCGGTAAAACGACCCTGGTGAATCTGCTGATGCGGTTCTACGAGGTTTCCGGGGGCCGGA
TCACTCTGGACGGGGTGGACATCGCGTCCATGTCCCGGGACGAACTCCGGGGCGGGATCGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGGTCCATCGCGGAGAACATCGCGTACGGGGCCGCGGGTGAGCGTGAGGTGACGCGCGGGGAGATCGA
GGAGGCGGCGCGGGCCGCGCACGCGGACCGTTTCATCCGTACGTTGCCGGACGGGTACGACACCGTGATCGACGACGAGG
GGACGGGGGTGAGCGCGGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGATCCGGTGATCCTGGTGCTG
GACGAGGCGACGAGTTCCGTGGACACACGGACGGAGGTTCTCATCCAGAAGGCGATGGCCAAACTGGCGCACGGGCGGAC
GTCGTTCGTGATCGCGCATCGGCTGTCGACGATTCGGGACGCGGACACGATTCTGGTGATGGAGAACGGGGCGATCGTGG
AACAGGGGGCGCACGAGGAGCTGTTGGGGGCGGACGGGGCTTATGCGCGGTTGTACAAGGCGCAGTTCGCGGAGGCGGTG
GCTGAGGTGGAGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-351)

ABC transporter (ABC_tran)

(414-565)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.385

96.429

0.399