Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHN38_RS32130 Genome accession   NZ_CP107765
Coordinates   6978761..6979402 (+) Length   213 a.a.
NCBI ID   WP_016436290.1    Uniprot ID   A0ABS9XP38
Organism   Streptomyces sp. NBC_00588     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6973761..6984402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN38_RS32110 (OHN38_32085) - 6974541..6975281 (-) 741 WP_016436286.1 transglycosylase SLT domain-containing protein -
  OHN38_RS32115 (OHN38_32090) - 6975581..6976702 (-) 1122 WP_242711907.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  OHN38_RS32120 (OHN38_32095) - 6976699..6977397 (-) 699 WP_330284024.1 SDR family NAD(P)-dependent oxidoreductase -
  OHN38_RS32125 (OHN38_32100) - 6977623..6978768 (+) 1146 WP_330284025.1 GAF domain-containing sensor histidine kinase -
  OHN38_RS32130 (OHN38_32105) vraR 6978761..6979402 (+) 642 WP_016436290.1 response regulator Regulator
  OHN38_RS32135 (OHN38_32110) chpE 6979577..6979819 (+) 243 WP_016436291.1 chaplin ChpE -
  OHN38_RS32140 (OHN38_32115) - 6980059..6980847 (-) 789 WP_330284026.1 hypothetical protein -
  OHN38_RS32145 (OHN38_32120) - 6980987..6981784 (+) 798 WP_016436293.1 ABC transporter ATP-binding protein -
  OHN38_RS32150 (OHN38_32125) - 6981893..6982324 (+) 432 WP_037782702.1 NfeD family protein -
  OHN38_RS32155 (OHN38_32130) - 6982455..6983402 (+) 948 WP_330284027.1 SPFH domain-containing protein -
  OHN38_RS32160 (OHN38_32135) - 6983540..6984046 (-) 507 WP_016436296.1 HNH endonuclease -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 22939.17 Da        Isoelectric Point: 5.1544

>NTDB_id=645898 OHN38_RS32130 WP_016436290.1 6978761..6979402(+) (vraR) [Streptomyces sp. NBC_00588]
MADAIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGAEGVARAEELRPDVVLMDVKMPGMDGVDALRRLRELDNPAR
VLIVTSFTEQRTVVPALRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEEANSGQGRGGSLTEREREVL
GLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVTG

Nucleotide


Download         Length: 642 bp        

>NTDB_id=645898 OHN38_RS32130 WP_016436290.1 6978761..6979402(+) (vraR) [Streptomyces sp. NBC_00588]
GTGGCTGACGCAATCAAGGTGCTGCTCGTCGACGACCACCAGGTGGTCCGCCGCGGCCTGCGCACCTTCCTGGAGGTGCA
GGACGACATCGAGGTCGTGGGCGAGGCGGCCGACGGCGCCGAAGGAGTCGCCCGCGCCGAGGAGTTGCGGCCCGACGTCG
TCCTGATGGACGTCAAGATGCCGGGCATGGACGGCGTGGACGCCCTGCGCAGACTGCGCGAGCTGGACAACCCCGCGCGC
GTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACGGTGGTCCCGGCCCTGCGCGCGGGCGCCGCCGGCTATGTCTACAA
GGACGTGGACCCGGACGCACTCGCCGGAGCCATCCGCTCCGTGCACGCCGGGCACATCCTGCTCCAGCCCGAGGTCGCGG
GCGCCCTGCTCTCCCAGGAGGAGGCCAACTCGGGCCAGGGGAGAGGCGGTTCACTCACGGAGCGGGAGCGCGAGGTGCTG
GGCCTGATAGCGGACGGCCGCTCGAACCGCGAGATCGCGCGCGCCCTCGTCCTGTCCGAGAAGACCGTCAAGACCCACGT
CTCGAACATCCTGATGAAGCTCGATTTGGCGGACCGCACCCAGGCGGCTCTGTGGGCCGTGCGCCACGGCGTGACCGGCT
GA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-118)

Bacterial regulatory proteins, luxR family (GerE)

(151-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.698

99.531

0.465
  degU Bacillus subtilis subsp. subtilis str. 168

38.462

100

0.399