Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   L1A16_RS10415 Genome accession   NZ_CP090885
Coordinates   2028303..2028965 (-) Length   220 a.a.
NCBI ID   WP_000649964.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ND6401     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2023303..2033965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A16_RS10390 (L1A16_10390) - 2023453..2023719 (-) 267 WP_001278167.1 Veg family protein -
  L1A16_RS10395 (L1A16_10395) dnaB 2023721..2025073 (-) 1353 WP_000852486.1 replicative DNA helicase -
  L1A16_RS10400 (L1A16_10400) rplI 2025117..2025569 (-) 453 WP_000864220.1 50S ribosomal protein L9 -
  L1A16_RS10405 (L1A16_10405) - 2025566..2027539 (-) 1974 WP_000715121.1 DHH family phosphoesterase -
  L1A16_RS10410 (L1A16_10410) raiA 2027675..2028223 (-) 549 WP_000599107.1 ribosome-associated translation inhibitor RaiA -
  L1A16_RS10415 (L1A16_10415) comFC/cflB 2028303..2028965 (-) 663 WP_000649964.1 ComF family protein Machinery gene
  L1A16_RS10420 (L1A16_10420) comFA/cflA 2028962..2030260 (-) 1299 WP_000867612.1 DEAD/DEAH box helicase Machinery gene
  L1A16_RS10425 (L1A16_10425) - 2030316..2030951 (+) 636 WP_000395739.1 YigZ family protein -
  L1A16_RS10430 (L1A16_10430) cysK 2031236..2032156 (+) 921 WP_000029867.1 cysteine synthase A -
  L1A16_RS10435 (L1A16_10435) - 2032395..2032760 (-) 366 Protein_2037 IS66 family transposase -
  L1A16_RS10440 (L1A16_10440) - 2032742..2033029 (+) 288 Protein_2038 transposase -
  L1A16_RS10445 (L1A16_10445) tnpB 2033184..2033507 (-) 324 WP_000973415.1 IS66 family insertion sequence element accessory protein TnpB -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25253.15 Da        Isoelectric Point: 7.3688

>NTDB_id=645872 L1A16_RS10415 WP_000649964.1 2028303..2028965(-) (comFC/cflB) [Streptococcus pneumoniae strain ND6401]
MKCLLCGQTMKTVLTFSSLLLLRNDDSCLCSDCDSTFERIGEENCPNCMKTELSIKCQDCQLWCKEGVEVSHRAIFTYNQ
AMKDFFSRYKFDGDFLLRKVFASFLSEELKKYKEYQFVVIPLSPDRYANRGFNQVEGLVEAAGFEYLDLLEKREERASSS
KNRSERLGTELPFFIKSGVTIPKKILLIDDIYTTGATINRVKKLLEEAGAKDVKTFSLVR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=645872 L1A16_RS10415 WP_000649964.1 2028303..2028965(-) (comFC/cflB) [Streptococcus pneumoniae strain ND6401]
ATGAAGTGCTTGTTATGTGGGCAGACTATGAAGACTGTTTTAACTTTTAGTAGTCTCTTACTTCTGAGGAATGATGACTC
TTGTCTTTGTTCAGACTGTGATTCTACTTTTGAAAGAATTGGGGAAGAGAACTGTCCAAATTGTATGAAAACAGAGTTGT
CAATAAAGTGTCAAGATTGTCAACTTTGGTGTAAAGAGGGAGTTGAAGTCAGTCATAGAGCGATTTTTACTTACAATCAA
GCTATGAAGGATTTTTTCAGTCGGTATAAGTTTGATGGAGACTTCCTGTTAAGAAAAGTTTTCGCTTCATTTTTAAGTGA
GGAGTTGAAAAAGTACAAAGAGTATCAATTTGTTGTAATTCCCCTAAGTCCTGATAGATATGCTAATAGAGGATTTAATC
AGGTTGAGGGCTTGGTAGAGGCAGCAGGCTTTGAGTATCTGGATTTATTAGAGAAAAGAGAAGAGAGAGCCAGTTCTTCT
AAAAATCGTTCAGAGCGCTTGGGGACAGAACTTCCTTTCTTTATTAAAAGTGGAGTCACTATTCCTAAAAAAATCCTACT
TATAGATGATATCTATACTACAGGAGCAACTATAAATCGTGTTAAGAAACTGTTGGAAGAAGCTGGTGCTAAGGATGTAA
AAACATTTTCCCTTGTAAGATGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(153-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

99.545

100

0.995
  comFC/cflB Streptococcus pneumoniae Rx1

99.091

100

0.991
  comFC/cflB Streptococcus pneumoniae D39

99.091

100

0.991
  comFC/cflB Streptococcus pneumoniae R6

99.091

100

0.991
  comFC/cflB Streptococcus mitis NCTC 12261

91.818

100

0.918
  comFC/cflB Streptococcus mitis SK321

90.909

100

0.909