Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   L1A04_RS04080 Genome accession   NZ_CP090879
Coordinates   795942..796445 (-) Length   167 a.a.
NCBI ID   WP_000934799.1    Uniprot ID   A0A7U7IE99
Organism   Staphylococcus aureus strain SAUR_BFS2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 790942..801445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A04_RS04040 (L1A04_04040) - 791128..791337 (+) 210 WP_000211680.1 hypothetical protein -
  L1A04_RS04045 (L1A04_04045) - 791376..791630 (-) 255 WP_000466746.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  L1A04_RS04050 (L1A04_04050) - 791924..792187 (+) 264 WP_001055897.1 helix-turn-helix domain-containing protein -
  L1A04_RS04055 (L1A04_04055) - 792325..792897 (-) 573 WP_000769723.1 PepSY domain-containing protein -
  L1A04_RS04060 (L1A04_04060) - 793078..793446 (-) 369 WP_000849155.1 YxeA family protein -
  L1A04_RS04065 (L1A04_04065) - 793683..794397 (+) 715 Protein_791 tyrosine-type recombinase/integrase -
  L1A04_RS04070 (L1A04_04070) - 794403..795410 (+) 1008 WP_001080636.1 Abi family protein -
  L1A04_RS04075 (L1A04_04075) rpsR 795648..795890 (-) 243 WP_000897044.1 30S ribosomal protein S18 -
  L1A04_RS04080 (L1A04_04080) ssbA 795942..796445 (-) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  L1A04_RS04085 (L1A04_04085) rpsF 796466..796762 (-) 297 WP_001261460.1 30S ribosomal protein S6 -
  L1A04_RS04090 (L1A04_04090) - 797006..797197 (+) 192 WP_001052483.1 hypothetical protein -
  L1A04_RS04095 (L1A04_04095) ychF 797283..798380 (-) 1098 WP_057485493.1 redox-regulated ATPase YchF -
  L1A04_RS04100 (L1A04_04100) - 798392..798595 (-) 204 WP_000157348.1 DUF951 domain-containing protein -
  L1A04_RS04105 (L1A04_04105) - 798625..799506 (-) 882 WP_000373076.1 mechanosensitive ion channel family protein -
  L1A04_RS04110 (L1A04_04110) - 799660..800505 (-) 846 WP_001573568.1 ParB/RepB/Spo0J family partition protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18539.12 Da        Isoelectric Point: 4.7305

>NTDB_id=645468 L1A04_RS04080 WP_000934799.1 795942..796445(-) (ssbA) [Staphylococcus aureus strain SAUR_BFS2]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=645468 L1A04_RS04080 WP_000934799.1 795942..796445(-) (ssbA) [Staphylococcus aureus strain SAUR_BFS2]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IE99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365