Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   SPB_RS03020 Genome accession   NZ_AEUT02000001
Coordinates   606397..607701 (-) Length   434 a.a.
NCBI ID   WP_037621127.1    Uniprot ID   -
Organism   Streptococcus parauberis NCFD 2020     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 601397..612701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPB_RS02990 (SPB_0612) - 601919..602308 (-) 390 WP_037621125.1 cytidine deaminase -
  SPB_RS02995 (SPB_0613) deoC 602295..602957 (-) 663 WP_003103647.1 deoxyribose-phosphate aldolase -
  SPB_RS03000 (SPB_0614) - 602971..604248 (-) 1278 WP_003102832.1 pyrimidine-nucleoside phosphorylase -
  SPB_RS03005 (SPB_0615) - 604235..604834 (-) 600 WP_003103028.1 class I SAM-dependent methyltransferase -
  SPB_RS03010 (SPB_0616) coaA 605085..606005 (+) 921 WP_003105987.1 type I pantothenate kinase -
  SPB_RS03015 (SPB_0617) rpsT 606074..606307 (+) 234 WP_003105398.1 30S ribosomal protein S20 -
  SPB_RS03020 (SPB_0618) ciaH 606397..607701 (-) 1305 WP_037621127.1 cell wall metabolism sensor histidine kinase WalK Regulator
  SPB_RS03025 (SPB_0619) ciaR 607694..608368 (-) 675 WP_003104260.1 response regulator transcription factor Regulator
  SPB_RS03030 (SPB_0620) - 608486..611023 (-) 2538 WP_003105115.1 M1 family metallopeptidase -
  SPB_RS03035 (SPB_0621) phoU 611087..611740 (-) 654 WP_003103398.1 phosphate signaling complex protein PhoU -
  SPB_RS03040 (SPB_0622) pstB 611806..612564 (-) 759 WP_003104047.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 434 a.a.        Molecular weight: 49735.06 Da        Isoelectric Point: 9.1102

>NTDB_id=64538 SPB_RS03020 WP_037621127.1 606397..607701(-) (ciaH) [Streptococcus parauberis NCFD 2020]
MNKIKLFFKSGSFDHFFHFFTVFTSIFVIMTFIILQIMRFGVYSTVDNSLNLVAKHSTLYADKAMEQISLFNFDNQNFNE
ATSRYKSSLITDPVGNTDIILYSADGTILNPFDAFSNLNYFKLNPHQLNKIVTQKKTNFYGHDEKFHTVTIKVQSNNYPA
VSYLSAVANVDQLDRANERYENIIILVMSIFWLISIFASIYLAYWSRKPIVESFEKQKSFVENASHELRTPLAVLQNRLE
SLFRKPNETILENSEAIASSLEEVRNMRILTTNLLNLARRDDGIDVKKEEIGASFFDPIFENYKLIAEENGIKFQSFNEV
SYKFVTDKALLKQLITILFDNAVKYTAENGNIVILVKTTEKSLLLRVSDNGIGISNSDKERIFDRFYRVDKARTRQIGGF
GLGLALAKQIVVTLKGDITVKDNFPQGTIFQVKL

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=64538 SPB_RS03020 WP_037621127.1 606397..607701(-) (ciaH) [Streptococcus parauberis NCFD 2020]
ATGAATAAGATAAAATTATTTTTTAAGTCAGGGAGCTTTGATCATTTCTTTCATTTCTTCACTGTTTTTACAAGTATTTT
TGTTATTATGACTTTTATCATATTACAAATTATGCGCTTTGGTGTCTATTCAACAGTTGATAATAGTTTGAATCTTGTTG
CAAAACACTCTACTCTTTATGCTGATAAAGCGATGGAACAGATTTCACTCTTTAATTTTGATAATCAGAATTTTAATGAA
GCGACGAGTCGCTATAAGTCATCTTTGATTACTGATCCTGTTGGTAATACTGACATTATCTTATATAGTGCTGATGGAAC
AATTTTAAATCCCTTTGATGCTTTTTCAAACTTAAATTATTTTAAATTAAATCCACATCAACTTAATAAGATAGTTACCC
AAAAAAAAACAAATTTTTACGGACATGATGAAAAGTTTCATACTGTCACCATTAAAGTTCAATCAAATAATTATCCTGCC
GTTTCTTATCTCAGTGCGGTGGCAAATGTTGACCAACTTGATCGGGCTAATGAGCGGTATGAGAATATTATTATATTGGT
TATGAGTATCTTTTGGTTAATTTCCATTTTTGCAAGTATCTATTTAGCTTATTGGAGTCGAAAACCTATTGTTGAGAGTT
TTGAAAAGCAGAAGTCATTTGTTGAAAATGCTAGTCATGAATTAAGGACGCCTTTGGCTGTGTTACAAAATCGCTTAGAA
TCTTTGTTTAGGAAGCCAAACGAGACTATCTTAGAGAATAGCGAAGCCATTGCTTCAAGTCTTGAAGAAGTAAGAAACAT
GCGTATTTTGACGACTAATCTCCTAAATTTAGCTAGACGAGATGATGGGATTGATGTAAAGAAAGAAGAAATTGGCGCTT
CATTCTTTGATCCTATTTTTGAAAATTATAAGCTAATTGCGGAAGAAAATGGGATAAAATTTCAATCATTTAACGAAGTT
TCCTATAAATTTGTCACTGATAAAGCTTTGTTAAAACAATTAATAACCATCTTATTTGATAATGCTGTGAAATATACAGC
TGAAAATGGGAATATTGTAATCCTCGTTAAAACGACTGAGAAATCACTCTTACTTCGTGTTAGTGATAATGGCATAGGAA
TTTCTAATTCAGATAAAGAGAGAATTTTTGATCGCTTTTATCGGGTTGATAAAGCTAGGACGCGTCAAATTGGTGGATTC
GGTCTAGGCCTAGCATTAGCTAAACAGATTGTGGTCACTTTAAAAGGTGATATTACAGTCAAAGATAATTTTCCTCAAGG
AACTATTTTTCAGGTCAAATTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(327-434)

His Kinase A (phospho-acceptor) domain (HisKA)

(218-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

56.398

97.235

0.548
  ciaH Streptococcus pneumoniae Rx1

49.772

100

0.502
  ciaH Streptococcus pneumoniae D39

49.772

100

0.502
  ciaH Streptococcus pneumoniae R6

49.772

100

0.502
  ciaH Streptococcus pneumoniae TIGR4

49.772

100

0.502

Multiple sequence alignment