Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   L0992_RS06505 Genome accession   NZ_CP090854
Coordinates   1436905..1437486 (+) Length   193 a.a.
NCBI ID   WP_019822603.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain YSX02     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1431905..1442486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0992_RS06485 (L0992_06485) panP 1432219..1433862 (-) 1644 WP_373950733.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -
  L0992_RS06490 (L0992_06490) - 1433981..1434508 (-) 528 WP_146492362.1 hypothetical protein -
  L0992_RS06495 (L0992_06495) - 1434683..1435588 (-) 906 WP_373950736.1 lysine exporter LysO family protein -
  L0992_RS06500 (L0992_06500) - 1435627..1436547 (-) 921 WP_373950738.1 HDOD domain-containing protein -
  L0992_RS06505 (L0992_06505) tfoX 1436905..1437486 (+) 582 WP_019822603.1 TfoX/Sxy family DNA transformation protein Regulator
  L0992_RS06510 (L0992_06510) - 1437632..1438174 (-) 543 WP_060467931.1 hypothetical protein -
  L0992_RS06515 (L0992_06515) - 1438471..1438968 (-) 498 WP_373950741.1 response regulator -
  L0992_RS06520 (L0992_06520) - 1438961..1440904 (-) 1944 WP_373950743.1 ATP-binding protein -
  L0992_RS06525 (L0992_06525) - 1441088..1442350 (+) 1263 WP_373950745.1 DUF945 family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22202.62 Da        Isoelectric Point: 9.3844

>NTDB_id=645250 L0992_RS06505 WP_019822603.1 1436905..1437486(+) (tfoX) [Vibrio pomeroyi strain YSX02]
MTETAFINYVNQFGEHQKRSMFGGIGLFQNDAMFALLSEGCLFIRGGKSLDKKLTDLDCEKYRHVKKQTTATVNYYDITD
LFTCEHPELDSIIRTSIDNSIQQRSFKKSSASRRLRDLPNMQLTLERMVKKAGVDDVSMFMQLGAPEVFNKVRKAYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKSCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=645250 L0992_RS06505 WP_019822603.1 1436905..1437486(+) (tfoX) [Vibrio pomeroyi strain YSX02]
ATGACCGAGACAGCATTTATTAATTACGTGAATCAATTTGGTGAGCATCAAAAACGTTCTATGTTCGGAGGTATTGGCCT
CTTTCAAAATGACGCTATGTTCGCTTTATTGAGTGAAGGTTGTTTATTCATTAGAGGTGGAAAGTCATTAGATAAAAAAC
TGACCGATCTTGATTGTGAAAAGTATCGTCATGTGAAAAAACAGACAACAGCAACCGTAAATTACTACGATATTACTGAC
CTGTTTACATGCGAACATCCTGAATTGGATAGCATTATTCGTACTTCAATCGATAATTCAATTCAGCAACGCAGCTTCAA
GAAATCATCAGCAAGCCGTAGGTTAAGAGATCTGCCAAACATGCAGCTTACACTAGAGCGCATGGTTAAGAAGGCTGGTG
TGGATGATGTATCAATGTTTATGCAGTTGGGCGCGCCTGAAGTGTTTAATAAGGTTCGCAAAGCGTACGGAAATGATGTT
GACCTAAAACTACTTTGGAAATTTGCGGGCGCAATTGATGGTATTCACTGGAAACTATTACAAGAGCCACGCAAGCAGCA
ATTATTAAAGAGCTGCCACTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

74.093

100

0.741
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

74.093

100

0.741
  tfoX Vibrio cholerae strain A1552

74.093

100

0.741
  tfoX Vibrio campbellii strain DS40M4

70.466

100

0.705
  tfoX Vibrio parahaemolyticus RIMD 2210633

70.466

100

0.705
  tfoX Aliivibrio fischeri ES114

57.895

98.446

0.57