Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   L0994_RS13320 Genome accession   NZ_CP090847
Coordinates   2955043..2955690 (+) Length   215 a.a.
NCBI ID   WP_016767798.1    Uniprot ID   A0AAN0LZQ5
Organism   Vibrio cyclitrophicus strain WXL032     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2950043..2960690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0994_RS13300 (L0994_13255) csrD 2950604..2952619 (-) 2016 WP_373929884.1 RNase E specificity factor CsrD -
  L0994_RS13305 (L0994_13260) - 2952761..2953603 (-) 843 WP_373930554.1 IS3 family transposase -
  L0994_RS13310 (L0994_13265) - 2953600..2954109 (-) 510 WP_016784615.1 helix-turn-helix domain-containing protein -
  L0994_RS13315 (L0994_13270) ssb 2954210..2954764 (-) 555 WP_010434324.1 single-stranded DNA-binding protein Machinery gene
  L0994_RS13320 (L0994_13275) qstR 2955043..2955690 (+) 648 WP_016767798.1 LuxR C-terminal-related transcriptional regulator Regulator
  L0994_RS13325 (L0994_13280) galU 2955848..2956720 (+) 873 WP_004735975.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  L0994_RS13330 (L0994_13285) uvrA 2956904..2959735 (+) 2832 WP_010434318.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25029.27 Da        Isoelectric Point: 9.9854

>NTDB_id=645231 L0994_RS13320 WP_016767798.1 2955043..2955690(+) (qstR) [Vibrio cyclitrophicus strain WXL032]
MRKSRYARTLHFLCIDPSETHLHVKEIEKHLIIPLYKMTAGDLMLFDRKQSNRILLIDYKEVPQLIVVFPNLPVMWKNNE
IILFNVPQQLPTSELLTFGVLKGLFYDSEQKVKIAKGIQQVINGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=645231 L0994_RS13320 WP_016767798.1 2955043..2955690(+) (qstR) [Vibrio cyclitrophicus strain WXL032]
ATGAGAAAATCTCGATATGCTCGCACTTTACACTTTCTGTGCATAGATCCAAGCGAGACTCACCTACACGTAAAAGAGAT
AGAAAAGCACCTAATTATCCCACTCTACAAGATGACAGCGGGCGACTTGATGCTTTTCGATAGAAAGCAAAGTAATCGTA
TCTTACTCATCGACTACAAAGAGGTGCCACAGTTAATCGTTGTTTTCCCTAACTTACCCGTCATGTGGAAAAACAATGAG
ATCATCTTGTTCAATGTACCTCAACAGCTCCCTACCTCGGAGTTGCTCACTTTCGGCGTATTAAAAGGGCTATTTTATGA
CTCCGAACAAAAAGTGAAAATAGCAAAGGGGATTCAACAGGTCATTAATGGTGATAATTGGTTACCACGAAAAGTAACCA
ATCAACTGCTTTTTTATTACCGTAATATGGTGAACACCAACACGACACCCACCAATGTAGATTTGACGATCAGAGAAATC
CAAGTGATCCGTTGCCTTCAATCAGGGTCATCCAACACTCAAATAGCCGATGATTTATTTATTAGCGAGTTCACCGTAAA
GTCACACCTTTATCAGATTTTCCGTAAGTTAGCGGTTAAGAATAGAGTCCAAGCTATCGCATGGGCTAATCAGAACTTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

54.419

100

0.544
  qstR Vibrio parahaemolyticus RIMD 2210633

53.023

100

0.53
  qstR Vibrio cholerae strain A1552

49.065

99.535

0.488