Detailed information NTG0645230

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: L0994_RS13315
• Genome accession: NZ_CP090847
• Coordinates: 2954210..2954764 (-)
• Length: 184 a.a.
• NCBI ID: WP_010434324.1
• Uniprot ID: A0A7Z1MML7
• Organism: Vibrio cyclitrophicus strain WXL032
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	2941081..2953761	2954210..2954764	flank	449

Gene organization within MGE regions

Location: 2941081..2954764

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0994_RS13255 (L0994_13210)	-	2941081..2941536 (-)	456	WP_016790950.1	hypothetical protein	-
L0994_RS13260 (L0994_13215)	-	2941540..2942763 (-)	1224	WP_016795710.1	type II secretion system F family protein	-
L0994_RS13265 (L0994_13220)	-	2942776..2944500 (-)	1725	WP_010434345.1	GspE/PulE family protein	-
L0994_RS13270 (L0994_13225)	-	2944490..2945638 (-)	1149	WP_102265585.1	lipopolysaccharide assembly protein LapB	-
L0994_RS13275 (L0994_13230)	-	2945641..2946480 (-)	840	WP_010434338.1	ExeA family protein	-
L0994_RS13280 (L0994_13235)	mshL	2946534..2948171 (-)	1638	WP_373929883.1	pilus (MSHA type) biogenesis protein MshL	-
L0994_RS13285 (L0994_13240)	-	2948187..2948519 (-)	333	WP_016788320.1	MSHA biogenesis protein MshK	-
L0994_RS13290 (L0994_13245)	pilO	2948512..2949159 (-)	648	WP_010434330.1	type 4a pilus biogenesis protein PilO	-
L0994_RS13295 (L0994_13250)	-	2949159..2950601 (-)	1443	WP_146531780.1	MSHA biogenesis protein MshI	-
L0994_RS13300 (L0994_13255)	csrD	2950604..2952619 (-)	2016	WP_373929884.1	RNase E specificity factor CsrD	-
L0994_RS13305 (L0994_13260)	-	2952761..2953603 (-)	843	WP_373930554.1	IS3 family transposase	-
L0994_RS13310 (L0994_13265)	-	2953600..2954109 (-)	510	WP_016784615.1	helix-turn-helix domain-containing protein	-
L0994_RS13315 (L0994_13270)	ssb	2954210..2954764 (-)	555	WP_010434324.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 184 a.a.
• Molecular weight: 20286.42 Da
• Isoelectric Point: 5.2358

>NTDB_id=645230 L0994_RS13315 WP_010434324.1 2954210..2954764(-) (ssb) [Vibrio cyclitrophicus strain WXL032]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQQYSAPAQQQPKAP
QQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide

• Length: 555 bp

>NTDB_id=645230 L0994_RS13315 WP_010434324.1 2954210..2954764(-) (ssb) [Vibrio cyclitrophicus strain WXL032]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGCGCAGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTGGCGGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAACGGTGTAATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAACCACAACAGCAGCAACAACAATACAGTGCTCCTGCTCAACAGCAGCCGAAAGCACCT
CAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-105)

3D structure

• AlphaFold DB: A0A7Z1MML7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	81.72	100	0.826
ssb	Glaesserella parasuis strain SC1401	57.219	100	0.582
ssb	Neisseria meningitidis MC58	47.826	100	0.478
ssb	Neisseria gonorrhoeae MS11	47.826	100	0.478