Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SMSK321_RS10630 Genome accession   NZ_AEDT01000032
Coordinates   237579..238337 (+) Length   252 a.a.
NCBI ID   WP_000410371.1    Uniprot ID   -
Organism   Streptococcus mitis SK321     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 232579..243337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMSK321_RS0102895 comE 233174..233926 (-) 753 WP_000866074.1 competence system response regulator transcription factor ComE Regulator
  SMSK321_RS10615 (SMSK321_1634) comD 233923..235248 (-) 1326 WP_001048129.1 competence system sensor histidine kinase ComD Regulator
  SMSK321_RS0102900 comC 235269..235394 (-) 126 WP_000799685.1 competence-stimulating peptide ComC Regulator
  SMSK321_RS10620 (SMSK321_1635) rlmH 235677..236156 (-) 480 WP_000695928.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SMSK321_RS10625 (SMSK321_1636) htrA 236340..237521 (+) 1182 WP_000681589.1 S1C family serine protease Regulator
  SMSK321_RS10630 (SMSK321_1637) spo0J 237579..238337 (+) 759 WP_000410371.1 ParB/RepB/Spo0J family partition protein Regulator
  SMSK321_RS10635 (SMSK321_1638) dnaA 238551..239912 (+) 1362 WP_000660604.1 chromosomal replication initiator protein DnaA -
  SMSK321_RS10640 (SMSK321_1639) dnaN 240071..241207 (+) 1137 WP_000581168.1 DNA polymerase III subunit beta -
  SMSK321_RS10645 (SMSK321_1640) - 241272..241466 (+) 195 WP_000285186.1 DUF951 domain-containing protein -
  SMSK321_RS10650 (SMSK321_1641) ychF 241551..242666 (+) 1116 WP_001218721.1 redox-regulated ATPase YchF -
  SMSK321_RS10655 (SMSK321_1642) pth 242739..243308 (+) 570 WP_000163938.1 aminoacyl-tRNA hydrolase -

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29104.46 Da        Isoelectric Point: 8.2764

>NTDB_id=64522 SMSK321_RS10630 WP_000410371.1 237579..238337(+) (spo0J) [Streptococcus mitis SK321]
MEKFEMISITDIQKNPYQPRKEFDGEKLHELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLTSIPAVVKQ
LSDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEHILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIYEDISVRKLEALLTEKKQKKKKKNDYFIQNEEEQLKKLLGLDVEIKLSKKDNGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=64522 SMSK321_RS10630 WP_000410371.1 237579..238337(+) (spo0J) [Streptococcus mitis SK321]
ATGGAAAAATTTGAAATGATTTCTATCACGGATATACAAAAAAATCCCTATCAACCTCGAAAAGAATTTGATGGAGAAAA
ACTACATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTAACGTCTATCCCAGCTGTTGTTAAACAG
CTCTCAGACCAAGAGATGATGGTCCAGTCCATCATTGAAAATTTACAAAGAGAAAATTTAAATCCAATAGAAGAAGCACG
CGCCTATGAATCTCTTGTAGAGAAAGGATTTACCCATGCTGAAATTGCAGATAAAATGGGCAAGTCTCGTCCATATATCA
GCAACTCTATTCGCTTGCTGTCCTTGCCAGAACATATCCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCA
CGTTCTCTAGTTGGCTTGAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATATATGAAGACATTTCTGTAAGGAA
GTTAGAAGCTCTTCTGACAGAGAAAAAACAAAAGAAAAAGAAAAAAAATGATTATTTCATACAAAATGAAGAAGAACAGT
TAAAAAAACTACTCGGATTAGATGTAGAAATCAAATTGTCTAAAAAAGACAATGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATACAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(145-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.988

100

0.512

Multiple sequence alignment