Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   L0993_RS08290 Genome accession   NZ_CP090845
Coordinates   1896847..1897428 (-) Length   193 a.a.
NCBI ID   WP_060467932.1    Uniprot ID   A0A109D9I9
Organism   Vibrio kanaloae strain WXL161     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1891847..1902428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0993_RS08270 (L0993_08250) - 1892065..1893327 (-) 1263 WP_269983450.1 DUF945 family protein -
  L0993_RS08275 (L0993_08255) - 1893510..1895453 (+) 1944 WP_161749069.1 ATP-binding protein -
  L0993_RS08280 (L0993_08260) - 1895446..1895943 (+) 498 WP_373937393.1 response regulator -
  L0993_RS08285 (L0993_08265) - 1896173..1896715 (+) 543 WP_060467931.1 hypothetical protein -
  L0993_RS08290 (L0993_08270) tfoX 1896847..1897428 (-) 582 WP_060467932.1 TfoX/Sxy family DNA transformation protein Regulator
  L0993_RS08295 (L0993_08275) - 1897784..1898704 (+) 921 WP_161672655.1 HDOD domain-containing protein -
  L0993_RS08300 (L0993_08280) - 1898759..1899664 (+) 906 WP_060467933.1 lysine exporter LysO family protein -
  L0993_RS08305 (L0993_08285) - 1899839..1900366 (+) 528 WP_373937396.1 hypothetical protein -
  L0993_RS08310 (L0993_08290) panP 1900485..1902128 (+) 1644 WP_373937397.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 22115.54 Da        Isoelectric Point: 9.3937

>NTDB_id=645165 L0993_RS08290 WP_060467932.1 1896847..1897428(-) (tfoX) [Vibrio kanaloae strain WXL161]
MTETAFINYVNQFGEHQKRSMFGGIGLFQNDAMFALLTGGCLFIRGGSSLDKKLTDLDCEKYRHVKKQTIATVNYYDITD
LFTCEHPELDSIIRTSIDNSIQQRSFKKSSASRRLRDLPNMQLTLERMVKKAGVDDVSMFMQLGAPEVFNKVRKAYGNDV
DLKLLWKFAGAIDGIHWKLLQEPRKQQLLKSCH

Nucleotide


Download         Length: 582 bp        

>NTDB_id=645165 L0993_RS08290 WP_060467932.1 1896847..1897428(-) (tfoX) [Vibrio kanaloae strain WXL161]
ATGACAGAGACAGCATTTATTAATTACGTGAATCAATTTGGCGAACATCAAAAACGTTCTATGTTTGGAGGTATTGGCCT
TTTTCAAAATGACGCTATGTTCGCTTTGTTAACAGGAGGTTGTTTATTCATTAGAGGTGGTAGTTCATTAGATAAAAAAC
TGACGGACCTTGATTGTGAAAAATATCGCCATGTAAAAAAACAGACAATAGCAACGGTAAATTATTACGATATTACTGAC
CTGTTTACATGTGAACATCCTGAATTGGATAGCATTATTCGTACTTCAATCGATAATTCAATACAGCAACGTAGTTTCAA
AAAATCTTCAGCGAGCCGCAGATTAAGAGATCTGCCTAACATGCAACTTACACTAGAACGTATGGTGAAAAAGGCTGGTG
TGGATGATGTTTCAATGTTTATGCAGTTGGGGGCGCCTGAAGTATTTAATAAGGTTCGCAAAGCATACGGAAATGATGTT
GACTTAAAACTACTTTGGAAATTTGCGGGTGCAATTGATGGTATCCATTGGAAACTGTTGCAAGAGCCACGCAAGCAGCA
ATTATTAAAGAGTTGCCATTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(9-98)

TfoX C-terminal domain (TfoX_C)

(112-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109D9I9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

72.539

100

0.725
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

72.539

100

0.725
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

72.539

100

0.725
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

72.539

100

0.725
  tfoX Vibrio cholerae strain A1552

72.539

100

0.725
  tfoX Vibrio campbellii strain DS40M4

69.43

100

0.694
  tfoX Vibrio parahaemolyticus RIMD 2210633

69.43

100

0.694
  tfoX Aliivibrio fischeri ES114

58.947

98.446

0.58