Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   LT978_RS14005 Genome accession   NZ_CP090838
Coordinates   2882899..2883477 (-) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus amyloliquefaciens strain TL106     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2877899..2888477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS13965 (LT978_13960) - 2878141..2878500 (+) 360 WP_012117241.1 hypothetical protein -
  LT978_RS13970 (LT978_13965) - 2878621..2878821 (+) 201 WP_003155162.1 DUF3311 domain-containing protein -
  LT978_RS13975 (LT978_13970) - 2878818..2880287 (+) 1470 WP_015388467.1 sodium:solute symporter -
  LT978_RS13980 (LT978_13975) - 2880328..2880645 (+) 318 WP_003155166.1 YbjQ family protein -
  LT978_RS13985 (LT978_13980) - 2880678..2880947 (-) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  LT978_RS13990 (LT978_13985) - 2881143..2881853 (+) 711 WP_003155170.1 YrpD family protein -
  LT978_RS13995 (LT978_13990) - 2881988..2882359 (-) 372 WP_003155172.1 iron chaperone -
  LT978_RS14000 (LT978_13995) - 2882386..2882754 (-) 369 WP_003155175.1 iron chaperone -
  LT978_RS14005 (LT978_14000) comK 2882899..2883477 (-) 579 WP_003155179.1 competence protein ComK Regulator
  LT978_RS14010 (LT978_14005) - 2883793..2884026 (+) 234 WP_003155181.1 IDEAL domain-containing protein -
  LT978_RS14015 (LT978_14010) - 2884057..2884914 (-) 858 WP_003155182.1 SDR family oxidoreductase -
  LT978_RS14020 (LT978_14015) - 2885039..2886562 (+) 1524 WP_003155183.1 FAD-dependent oxidoreductase -
  LT978_RS14025 (LT978_14020) - 2886685..2887977 (+) 1293 WP_024085090.1 globin-coupled sensor protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=645089 LT978_RS14005 WP_003155179.1 2882899..2883477(-) (comK) [Bacillus amyloliquefaciens strain TL106]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=645089 LT978_RS14005 WP_003155179.1 2882899..2883477(-) (comK) [Bacillus amyloliquefaciens strain TL106]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823