Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LT978_RS04615 Genome accession   NZ_CP090838
Coordinates   908481..909125 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain TL106     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 903481..914125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS04590 (LT978_04585) - 903880..904221 (-) 342 WP_014305721.1 hypothetical protein -
  LT978_RS04595 (LT978_04590) degQ 904687..904827 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  LT978_RS04600 (LT978_04595) comQ 904958..905944 (+) 987 WP_269321599.1 class 1 isoprenoid biosynthesis enzyme Regulator
  LT978_RS04605 (LT978_04600) comX 905907..906077 (+) 171 WP_003152048.1 competence pheromone ComX Regulator
  LT978_RS04610 (LT978_04605) comP 906097..908400 (+) 2304 WP_003152050.1 histidine kinase Regulator
  LT978_RS04615 (LT978_04610) comA 908481..909125 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  LT978_RS04620 (LT978_04615) - 909147..909530 (+) 384 WP_003152054.1 hotdog fold thioesterase -
  LT978_RS04625 (LT978_04620) mnhG 909570..909944 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  LT978_RS04630 (LT978_04625) - 909928..910212 (-) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  LT978_RS04635 (LT978_04630) - 910212..910688 (-) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  LT978_RS04640 (LT978_04635) - 910694..912175 (-) 1482 WP_139889984.1 Na+/H+ antiporter subunit D -
  LT978_RS04645 (LT978_04640) - 912168..912509 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  LT978_RS04650 (LT978_04645) - 912509..912940 (-) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=645047 LT978_RS04615 WP_003152052.1 908481..909125(+) (comA) [Bacillus amyloliquefaciens strain TL106]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=645047 LT978_RS04615 WP_003152052.1 908481..909125(+) (comA) [Bacillus amyloliquefaciens strain TL106]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGTGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864