Detailed information NTG0645044

Bioinformatically predicted

Overview

• Name: comQ
• Type: Regulator
• Locus tag: LT978_RS04600
• Genome accession: NZ_CP090838
• Coordinates: 904958..905944 (+)
• Length: 328 a.a.
• NCBI ID: WP_269321599.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain TL106
• Function: modification of ComX; production of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 899958..910944

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LT978_RS04570 (LT978_04565)	-	899993..900391 (+)	399	WP_003152031.1	DUF1694 domain-containing protein	-
LT978_RS04575 (LT978_04570)	-	900488..901039 (+)	552	WP_052586496.1	isochorismatase family cysteine hydrolase	-
LT978_RS04580 (LT978_04575)	-	901057..902523 (+)	1467	WP_014305722.1	nicotinate phosphoribosyltransferase	-
LT978_RS04585 (LT978_04580)	-	902653..903873 (+)	1221	WP_003152038.1	EAL and HDOD domain-containing protein	-
LT978_RS04590 (LT978_04585)	-	903880..904221 (-)	342	WP_014305721.1	hypothetical protein	-
LT978_RS04595 (LT978_04590)	degQ	904687..904827 (+)	141	WP_003152043.1	degradation enzyme regulation protein DegQ	Regulator
LT978_RS04600 (LT978_04595)	comQ	904958..905944 (+)	987	WP_269321599.1	class 1 isoprenoid biosynthesis enzyme	Regulator
LT978_RS04605 (LT978_04600)	comX	905907..906077 (+)	171	WP_003152048.1	competence pheromone ComX	Regulator
LT978_RS04610 (LT978_04605)	comP	906097..908400 (+)	2304	WP_003152050.1	histidine kinase	Regulator
LT978_RS04615 (LT978_04610)	comA	908481..909125 (+)	645	WP_003152052.1	response regulator transcription factor	Regulator
LT978_RS04620 (LT978_04615)	-	909147..909530 (+)	384	WP_003152054.1	hotdog fold thioesterase	-
LT978_RS04625 (LT978_04620)	mnhG	909570..909944 (-)	375	WP_003152056.1	monovalent cation/H(+) antiporter subunit G	-
LT978_RS04630 (LT978_04625)	-	909928..910212 (-)	285	WP_003152057.1	Na(+)/H(+) antiporter subunit F1	-
LT978_RS04635 (LT978_04630)	-	910212..910688 (-)	477	WP_003152059.1	Na+/H+ antiporter subunit E	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37795.36 Da
• Isoelectric Point: 5.6937

>NTDB_id=645044 LT978_RS04600 WP_269321599.1 904958..905944(+) (comQ) [Bacillus amyloliquefaciens strain TL106]
MKTIIEQMCLDANQIKNRMKSIIERNIFNEHLMQLLLRFIEPKKNFSLAESAVLHYVIFDGENQETAVNLGAAIEILTLT
SDIIDDLEDEDNRDAPWMKIDRSLALSAAFSLYTAGLQSINSISTNPLVIKYVLKYIQDAMQGQHDDLINKPETEDECLE
VIKLKCGSLFALANVTGTLLATGEFNKSVESYSYYKGIFEQISGDYHAIFKDNTSDILKDKHTLINLYLKRLFNKSSQEL
LRIFSDQKLYSQLRLNKKEFIQKLYDSGASQYVSVLYQLYMHKCGTEVENLNLDIKKIKIIKKHLLNNKNNKKDDEDAEF
NKLFFELS

Nucleotide

• Length: 987 bp

>NTDB_id=645044 LT978_RS04600 WP_269321599.1 904958..905944(+) (comQ) [Bacillus amyloliquefaciens strain TL106]
GTGAAGACAATTATTGAGCAAATGTGTTTAGATGCCAACCAAATCAAGAATAGAATGAAGAGTATAATAGAGCGGAACAT
ATTTAATGAACATCTAATGCAGCTCCTTCTTCGTTTTATTGAACCAAAAAAAAATTTTTCTCTAGCTGAATCAGCTGTTT
TGCATTATGTGATCTTTGACGGCGAAAATCAAGAAACCGCAGTGAACTTAGGTGCCGCTATTGAAATTCTTACACTTACT
TCCGATATAATTGATGACCTGGAAGATGAGGATAATCGAGATGCTCCTTGGATGAAGATAGATCGTTCACTAGCATTAAG
TGCAGCATTTTCATTATACACAGCAGGATTGCAAAGCATTAATTCGATTAGTACGAATCCTTTAGTGATTAAGTATGTAT
TAAAATATATTCAAGATGCAATGCAGGGTCAACATGATGATTTGATCAATAAACCAGAGACAGAAGATGAATGTTTAGAG
GTAATCAAGTTAAAATGCGGAAGTTTATTTGCGTTAGCAAATGTTACTGGTACGCTTTTAGCAACTGGAGAATTCAATAA
GTCTGTTGAAAGTTATTCCTATTATAAAGGGATATTTGAACAAATTTCCGGTGATTATCATGCTATTTTTAAGGATAATA
CTAGTGATATTCTGAAAGATAAACATACATTGATTAATTTATATCTTAAGCGCTTGTTTAATAAGTCTTCTCAAGAATTG
CTTCGTATATTCTCAGATCAAAAATTATATTCGCAACTGCGGCTTAATAAAAAAGAGTTTATTCAAAAGCTGTATGATTC
TGGAGCATCTCAATATGTTTCGGTTTTATACCAACTATACATGCATAAGTGTGGAACTGAAGTTGAAAATTTAAATTTAG
ATATAAAGAAGATAAAAATAATAAAAAAACACTTGTTGAATAATAAGAATAATAAGAAGGATGATGAAGATGCAGAATTT
AATAAATTATTTTTTGAATTATCCTGA

Domains

Predicted by InterproScan.

• Polyprenyl synthetase (polyprenyl_synt) (59-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comQ	Bacillus subtilis subsp. subtilis str. 168	61.246	88.11	0.54