Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Regulator
Locus tag   LT978_RS04610 Genome accession   NZ_CP090838
Coordinates   906097..908400 (+) Length   767 a.a.
NCBI ID   WP_003152050.1    Uniprot ID   A0A7S9HTU7
Organism   Bacillus amyloliquefaciens strain TL106     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 901097..913400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS04585 (LT978_04580) - 902653..903873 (+) 1221 WP_003152038.1 EAL and HDOD domain-containing protein -
  LT978_RS04590 (LT978_04585) - 903880..904221 (-) 342 WP_014305721.1 hypothetical protein -
  LT978_RS04595 (LT978_04590) degQ 904687..904827 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  LT978_RS04600 (LT978_04595) comQ 904958..905944 (+) 987 WP_269321599.1 class 1 isoprenoid biosynthesis enzyme Regulator
  LT978_RS04605 (LT978_04600) comX 905907..906077 (+) 171 WP_003152048.1 competence pheromone ComX Regulator
  LT978_RS04610 (LT978_04605) comP 906097..908400 (+) 2304 WP_003152050.1 histidine kinase Regulator
  LT978_RS04615 (LT978_04610) comA 908481..909125 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  LT978_RS04620 (LT978_04615) - 909147..909530 (+) 384 WP_003152054.1 hotdog fold thioesterase -
  LT978_RS04625 (LT978_04620) mnhG 909570..909944 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  LT978_RS04630 (LT978_04625) - 909928..910212 (-) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  LT978_RS04635 (LT978_04630) - 910212..910688 (-) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  LT978_RS04640 (LT978_04635) - 910694..912175 (-) 1482 WP_139889984.1 Na+/H+ antiporter subunit D -
  LT978_RS04645 (LT978_04640) - 912168..912509 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  LT978_RS04650 (LT978_04645) - 912509..912940 (-) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 767 a.a.        Molecular weight: 88959.40 Da        Isoelectric Point: 8.5618

>NTDB_id=645046 LT978_RS04610 WP_003152050.1 906097..908400(+) (comP) [Bacillus amyloliquefaciens strain TL106]
MKKLIKPFTISIIILSVIYVCYVAFININGLIVGTKIVENKHKVLEVAEMSKTSYGKFVGLKQGDMIVKINNKKPSLKYL
KGDTLYHVKSLDIKRNGQQIHLDDFDIVNLNGYYSYFLFVLPLVFYFLSLICIFYIVKVSQTRKSIAGYVLILFLLDISI
AYMSAGGPSRGHEFNRYINLFTFIASPIFYLQFIQEYFKELGKKFANRLISFLYIIPIINLLNEPFRHIYSYDFTTNLNL
VSFFFVTIYAFISVFYHLYKFKYSEHAYILKVLILTNTLSFLPFLLFYVIPIILTGSYILDALAAASLLVLIPLGLVYQF
VANKIFDIEFILGRMRYYGLLALVPALFIVGISAWFESIDIQMNPAQQTVFFFIVIFVIFYFKEVMDYKFRLKRFSEKFN
YQDSIFKYTQLIRSITSLKQMFKELKKTILDVLLVSKAYVFEVTSEGDILYHDKKDNEPDWEMYSKEFKKVTSEIGKIIE
LNRGFLIKIGERGGSSYVLLCLSTINTPRLTRDEISWLKTLSFYTSVSMENVIQIEELMNHLQDLKQQGSNPVWLKKLMF
TIEEKQRSDLARDLHDSVLQDLISLKRQCELFLADFKKEEPCQLEVQDKLHQMNEQMSDVILMTRETCHELRPQLLYDLG
LVKAVSKLAAQQQERAPFHIRLNTGRFTAALDLDTQLNLYRIIQEFLSNAMKHSQANEVLIMLISIQNKVILHYEDDGVG
CNQEEGGGQSMSMGLSGIKERVRALDGRMKIDTSEGNGFKADIEMEL

Nucleotide


Download         Length: 2304 bp        

>NTDB_id=645046 LT978_RS04610 WP_003152050.1 906097..908400(+) (comP) [Bacillus amyloliquefaciens strain TL106]
TTGAAGAAGCTTATAAAGCCATTTACAATATCCATTATTATTTTAAGTGTTATCTATGTTTGTTATGTCGCTTTTATTAA
CATAAATGGACTTATTGTAGGCACGAAAATTGTAGAAAATAAGCATAAAGTACTCGAAGTTGCTGAAATGTCAAAAACCT
CGTATGGAAAATTTGTAGGTTTAAAACAAGGTGATATGATTGTCAAAATTAATAATAAAAAACCATCTTTAAAATATCTA
AAAGGGGATACTCTCTATCACGTTAAGAGCTTAGATATAAAAAGAAATGGACAGCAAATTCATTTAGATGATTTTGATAT
TGTTAATTTAAATGGATACTACAGTTACTTTTTATTTGTCCTTCCCCTTGTATTTTATTTTTTGAGTTTAATATGTATAT
TTTATATTGTAAAGGTGAGTCAAACCAGAAAATCGATAGCTGGGTATGTCCTAATTCTCTTCCTGTTAGATATCTCAATA
GCTTATATGAGTGCTGGTGGTCCCTCAAGAGGTCATGAATTTAACAGATATATAAATTTGTTTACCTTCATTGCCTCACC
TATATTTTATCTCCAGTTTATTCAAGAGTATTTCAAGGAATTAGGTAAAAAATTTGCCAATCGCTTGATTTCTTTTCTAT
ATATCATACCGATAATTAATCTCTTAAACGAACCGTTTCGACATATTTATTCATATGACTTCACAACAAATTTAAATTTA
GTATCGTTTTTCTTCGTGACTATCTATGCATTTATATCTGTTTTCTATCATCTGTATAAATTCAAGTATTCAGAACATGC
TTATATTCTTAAGGTTTTAATTTTAACAAACACGCTCTCTTTTTTGCCTTTTTTGCTTTTTTATGTAATCCCAATTATTT
TGACAGGAAGTTATATATTAGATGCGTTGGCAGCGGCCTCCCTGCTCGTACTTATCCCATTGGGATTGGTATACCAGTTC
GTAGCTAACAAAATTTTTGATATTGAATTCATTTTAGGCAGGATGAGGTACTATGGCTTGCTTGCCTTAGTTCCAGCCCT
TTTTATTGTTGGGATTTCAGCTTGGTTCGAGTCAATAGATATACAAATGAATCCTGCTCAGCAAACTGTATTTTTCTTTA
TTGTGATATTTGTTATTTTTTATTTTAAAGAAGTAATGGATTATAAATTTCGGTTAAAACGTTTTTCTGAAAAATTTAAT
TATCAAGATAGTATATTCAAATATACTCAGCTTATCAGAAGCATAACATCTTTAAAACAAATGTTTAAAGAACTAAAAAA
GACGATTCTGGATGTTCTACTTGTCAGTAAAGCTTATGTCTTTGAAGTTACCTCTGAGGGTGACATTTTATATCATGATA
AAAAGGATAATGAGCCTGACTGGGAAATGTATTCAAAAGAATTTAAGAAAGTTACTTCAGAGATTGGAAAAATCATTGAG
CTAAACCGCGGTTTTTTAATCAAGATAGGAGAACGCGGGGGAAGTTCTTATGTTTTGCTTTGTTTGTCCACTATTAATAC
ACCGAGACTGACACGAGATGAGATTTCATGGTTGAAGACATTGTCTTTCTATACGAGTGTCTCTATGGAAAATGTGATAC
AGATCGAAGAACTCATGAACCATTTACAAGACCTGAAACAACAAGGCTCAAACCCGGTCTGGCTCAAAAAGCTGATGTTT
ACGATCGAGGAAAAGCAGCGTTCGGATTTGGCCCGTGATCTGCATGATTCAGTGCTGCAGGATTTGATTTCTTTGAAGCG
CCAGTGTGAGCTGTTTCTGGCCGATTTTAAGAAAGAGGAGCCTTGCCAGTTAGAGGTGCAGGACAAGCTTCATCAGATGA
ATGAGCAGATGTCGGATGTCATTTTGATGACCCGGGAGACGTGCCATGAGCTTCGGCCTCAGCTACTGTATGATTTGGGT
CTGGTCAAGGCGGTATCCAAGCTTGCCGCGCAGCAGCAGGAGCGTGCGCCGTTTCATATCCGTCTGAATACGGGCCGGTT
TACGGCGGCGCTGGATTTGGATACGCAGCTGAATTTGTACCGCATTATTCAGGAATTTCTTTCGAACGCCATGAAGCATT
CACAGGCGAATGAGGTGCTGATTATGCTGATCAGCATTCAAAATAAAGTGATTCTGCATTATGAAGACGACGGTGTCGGC
TGCAATCAGGAAGAAGGCGGCGGACAGTCGATGAGCATGGGTCTTTCGGGTATTAAGGAGCGCGTCCGTGCGCTTGACGG
ACGGATGAAAATCGACACAAGTGAAGGAAACGGTTTTAAAGCGGATATTGAAATGGAATTGTAA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(567-636)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S9HTU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

72.987

100

0.733