Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LT978_RS02690 Genome accession   NZ_CP090838
Coordinates   528577..529962 (+) Length   461 a.a.
NCBI ID   WP_139889935.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 523577..534962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS02670 (LT978_02665) - 524725..525372 (-) 648 WP_003151384.1 YigZ family protein -
  LT978_RS02675 (LT978_02670) degS 525595..526758 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  LT978_RS02680 (LT978_02675) degU 526835..527524 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LT978_RS02685 (LT978_02680) - 527622..528470 (+) 849 WP_139889934.1 DegV family protein -
  LT978_RS02690 (LT978_02685) comFA 528577..529962 (+) 1386 WP_139889935.1 DEAD/DEAH box helicase Machinery gene
  LT978_RS02695 (LT978_02690) - 530020..530304 (+) 285 WP_003151389.1 competence protein ComFB -
  LT978_RS02700 (LT978_02695) comFC 530310..530999 (+) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  LT978_RS02705 (LT978_02700) - 531073..531492 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  LT978_RS02710 (LT978_02705) flgM 531562..531828 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LT978_RS02715 (LT978_02710) - 531843..532325 (+) 483 WP_024085863.1 flagellar protein FlgN -
  LT978_RS02720 (LT978_02715) flgK 532341..533858 (+) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  LT978_RS02725 (LT978_02720) flgL 533870..534787 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52551.08 Da        Isoelectric Point: 10.2038

>NTDB_id=645039 LT978_RS02690 WP_139889935.1 528577..529962(+) (comFA) [Bacillus amyloliquefaciens strain TL106]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKAYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQVPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKYFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=645039 LT978_RS02690 WP_139889935.1 528577..529962(+) (comFA) [Bacillus amyloliquefaciens strain TL106]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGCATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGTCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTGGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGATATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAAGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTGCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAATATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631