Detailed information NTG0645037

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: LT978_RS02675
• Genome accession: NZ_CP090838
• Coordinates: 525595..526758 (+)
• Length: 387 a.a.
• NCBI ID: WP_003151385.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain TL106
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 520595..531758

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LT978_RS02655 (LT978_02650)	-	521011..522207 (+)	1197	WP_003151381.1	glycosyltransferase	-
LT978_RS02660 (LT978_02655)	-	522340..523416 (+)	1077	WP_003151382.1	MraY family glycosyltransferase	-
LT978_RS02665 (LT978_02660)	-	523506..524720 (-)	1215	WP_003151383.1	LCP family protein	-
LT978_RS02670 (LT978_02665)	-	524725..525372 (-)	648	WP_003151384.1	YigZ family protein	-
LT978_RS02675 (LT978_02670)	degS	525595..526758 (+)	1164	WP_003151385.1	two-component sensor histidine kinase DegS	Regulator
LT978_RS02680 (LT978_02675)	degU	526835..527524 (+)	690	WP_003219701.1	two-component system response regulator DegU	Regulator
LT978_RS02685 (LT978_02680)	-	527622..528470 (+)	849	WP_139889934.1	DegV family protein	-
LT978_RS02690 (LT978_02685)	comFA	528577..529962 (+)	1386	WP_139889935.1	DEAD/DEAH box helicase	Machinery gene
LT978_RS02695 (LT978_02690)	-	530020..530304 (+)	285	WP_003151389.1	competence protein ComFB	-
LT978_RS02700 (LT978_02695)	comFC	530310..530999 (+)	690	WP_197080391.1	phosphoribosyltransferase family protein	Machinery gene
LT978_RS02705 (LT978_02700)	-	531073..531492 (+)	420	WP_003151392.1	TIGR03826 family flagellar region protein	-

Sequence

Protein

• Length: 387 a.a.
• Molecular weight: 45014.82 Da
• Isoelectric Point: 7.1378

>NTDB_id=645037 LT978_RS02675 WP_003151385.1 525595..526758(+) (degS) [Bacillus amyloliquefaciens strain TL106]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide

• Length: 1164 bp

>NTDB_id=645037 LT978_RS02675 WP_003151385.1 525595..526758(+) (degS) [Bacillus amyloliquefaciens strain TL106]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGCTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAGATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTTCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAACATTCAGAATCAGAGGAAATAACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTTATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	95.325	99.483	0.948