Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LT978_RS02680 Genome accession   NZ_CP090838
Coordinates   526835..527524 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain TL106     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 521835..532524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS02660 (LT978_02655) - 522340..523416 (+) 1077 WP_003151382.1 MraY family glycosyltransferase -
  LT978_RS02665 (LT978_02660) - 523506..524720 (-) 1215 WP_003151383.1 LCP family protein -
  LT978_RS02670 (LT978_02665) - 524725..525372 (-) 648 WP_003151384.1 YigZ family protein -
  LT978_RS02675 (LT978_02670) degS 525595..526758 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  LT978_RS02680 (LT978_02675) degU 526835..527524 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LT978_RS02685 (LT978_02680) - 527622..528470 (+) 849 WP_139889934.1 DegV family protein -
  LT978_RS02690 (LT978_02685) comFA 528577..529962 (+) 1386 WP_139889935.1 DEAD/DEAH box helicase Machinery gene
  LT978_RS02695 (LT978_02690) - 530020..530304 (+) 285 WP_003151389.1 competence protein ComFB -
  LT978_RS02700 (LT978_02695) comFC 530310..530999 (+) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  LT978_RS02705 (LT978_02700) - 531073..531492 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  LT978_RS02710 (LT978_02705) flgM 531562..531828 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LT978_RS02715 (LT978_02710) - 531843..532325 (+) 483 WP_024085863.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=645038 LT978_RS02680 WP_003219701.1 526835..527524(+) (degU) [Bacillus amyloliquefaciens strain TL106]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=645038 LT978_RS02680 WP_003219701.1 526835..527524(+) (degU) [Bacillus amyloliquefaciens strain TL106]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCATGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1