Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LT978_RS02700 Genome accession   NZ_CP090838
Coordinates   530310..530999 (+) Length   229 a.a.
NCBI ID   WP_197080391.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TL106     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 525310..535999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT978_RS02675 (LT978_02670) degS 525595..526758 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  LT978_RS02680 (LT978_02675) degU 526835..527524 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  LT978_RS02685 (LT978_02680) - 527622..528470 (+) 849 WP_139889934.1 DegV family protein -
  LT978_RS02690 (LT978_02685) comFA 528577..529962 (+) 1386 WP_139889935.1 DEAD/DEAH box helicase Machinery gene
  LT978_RS02695 (LT978_02690) - 530020..530304 (+) 285 WP_003151389.1 competence protein ComFB -
  LT978_RS02700 (LT978_02695) comFC 530310..530999 (+) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  LT978_RS02705 (LT978_02700) - 531073..531492 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  LT978_RS02710 (LT978_02705) flgM 531562..531828 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  LT978_RS02715 (LT978_02710) - 531843..532325 (+) 483 WP_024085863.1 flagellar protein FlgN -
  LT978_RS02720 (LT978_02715) flgK 532341..533858 (+) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  LT978_RS02725 (LT978_02720) flgL 533870..534787 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  LT978_RS02730 (LT978_02725) - 534878..535447 (+) 570 WP_003151397.1 DUF6470 family protein -
  LT978_RS02735 (LT978_02730) fliW 535477..535908 (+) 432 WP_063174505.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25340.04 Da        Isoelectric Point: 8.4899

>NTDB_id=645040 LT978_RS02700 WP_197080391.1 530310..530999(+) (comFC) [Bacillus amyloliquefaciens strain TL106]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEDPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKHSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=645040 LT978_RS02700 WP_197080391.1 530310..530999(+) (comFC) [Bacillus amyloliquefaciens strain TL106]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGACCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGCACTCATTAGCTCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598