Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SMSK321_RS06585 Genome accession   NZ_AEDT01000016
Coordinates   88017..90011 (-) Length   664 a.a.
NCBI ID   WP_000747540.1    Uniprot ID   -
Organism   Streptococcus mitis SK321     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 83017..95011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMSK321_RS06560 (SMSK321_0752) - 83245..84084 (-) 840 WP_000182481.1 amino acid ABC transporter substrate-binding protein -
  SMSK321_RS06565 (SMSK321_0753) - 84094..84723 (-) 630 WP_000891758.1 amino acid ABC transporter ATP-binding protein -
  SMSK321_RS06570 (SMSK321_0754) - 84733..85374 (-) 642 WP_000120834.1 amino acid ABC transporter permease -
  SMSK321_RS06575 (SMSK321_0755) - 85514..86743 (-) 1230 WP_004234858.1 tetratricopeptide repeat protein -
  SMSK321_RS06580 (SMSK321_0756) - 86733..87899 (-) 1167 WP_000435460.1 AI-2E family transporter -
  SMSK321_RS06585 (SMSK321_0757) amiA3 88017..90011 (-) 1995 WP_000747540.1 peptide ABC transporter substrate-binding protein Regulator
  SMSK321_RS06590 (SMSK321_0758) - 90188..91201 (+) 1014 WP_000665634.1 lactonase family protein -
  SMSK321_RS06595 (SMSK321_0759) - 91246..91665 (-) 420 WP_000068040.1 F0F1 ATP synthase subunit epsilon -
  SMSK321_RS06600 (SMSK321_0760) atpD 91676..93082 (-) 1407 WP_000094357.1 F0F1 ATP synthase subunit beta -
  SMSK321_RS06605 (SMSK321_0761) - 93168..94046 (-) 879 WP_000301216.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 664 a.a.        Molecular weight: 73136.48 Da        Isoelectric Point: 5.0886

>NTDB_id=64502 SMSK321_RS06585 WP_000747540.1 88017..90011(-) (amiA3) [Streptococcus mitis SK321]
MKKRVFLATSVAVLSAAVLVACSSGNGNKEATKPATKPVTYAYVFSLDPVTLDYTVSGNVSTKQITGNVIDGLLENDQYG
NLVPSVAEDWTVSKDGLTYTYKIRQGVKWYTNEGEEYGEVKAQDFVTGLKHAADKKSQALYLVQDSIKGLDDYVNGKTTD
FSTVGVKATDDYTVVYTLNHPESFWNSKTTMGVLAPVSGDFLASKGDDFGKATDVTSILYNGAYLLKGLTSKSSIEMTKN
QNYWDKQNVFIDDIKLSFFDGQDADSLGRGFDEGHYPAAPLFKNSANYERLKEKYKDNIVYGQQRGGVFYMSTNIDRVSY
NHTAKTSDVEKSSTKKALLNKDFRQALAFAADRKAAVSQVFGDEVAPRKLRTSFTPPTFVQVGDQSFGQVTKIELDKLDN
VWKDVSLDDAQDSLHNVDKAKAKFESAKKTLQADGVQFPIHLDLPVSSTQTDFIHQAQSYKQSIEEALGSENVVVDIQQV
SDDELGNMTVLATSNNNVDWDINVNSGWSPDYADPSTYLDVFDPTSGPSLLGSLGVAPGTDNQAIKTVGLDKYKGLIDDA
NSEKTDLQKRYSKYAKAQAWLTDSALVIPVHSDGAQMLVTKKVLGSGADGWIGDKTGDNSYKYLKLQDKIVTSKEMDEFR
KKFADEKGKSNADYQKNLDRHIQD

Nucleotide


Download         Length: 1995 bp        

>NTDB_id=64502 SMSK321_RS06585 WP_000747540.1 88017..90011(-) (amiA3) [Streptococcus mitis SK321]
ATGAAAAAACGTGTTTTCTTAGCAACAAGTGTAGCAGTGTTATCAGCAGCAGTGCTAGTAGCGTGTTCATCTGGTAATGG
TAATAAAGAAGCAACTAAACCAGCAACTAAACCAGTTACTTATGCCTATGTATTCTCATTAGATCCTGTTACTTTGGATT
ATACAGTTTCTGGTAATGTCAGCACTAAACAGATTACAGGTAATGTTATTGATGGATTATTAGAAAATGATCAATATGGG
AATCTGGTCCCATCAGTTGCAGAAGATTGGACTGTTTCCAAAGATGGTTTGACCTATACCTATAAAATCCGTCAGGGTGT
CAAGTGGTATACCAATGAGGGAGAGGAGTATGGTGAAGTTAAGGCTCAGGATTTTGTAACTGGTCTTAAGCATGCAGCTG
ATAAGAAATCACAGGCTCTCTATTTGGTACAGGATTCTATCAAAGGATTGGATGACTATGTAAATGGGAAAACAACAGAT
TTCTCAACCGTAGGCGTGAAAGCAACAGATGATTATACTGTTGTTTATACTTTGAACCATCCAGAATCTTTCTGGAATTC
AAAAACAACAATGGGAGTCCTTGCTCCCGTGAGTGGAGATTTTTTGGCATCTAAAGGAGATGATTTTGGTAAGGCCACTG
ATGTAACGAGTATACTATACAATGGGGCATATCTTCTTAAGGGGCTTACTTCGAAATCTTCTATCGAAATGACCAAAAAC
CAAAATTACTGGGATAAGCAAAATGTCTTTATTGATGATATCAAGTTATCATTCTTTGATGGTCAAGATGCAGACTCTCT
AGGACGTGGTTTTGATGAGGGACATTATCCAGCTGCTCCACTCTTTAAAAACTCTGCCAACTATGAACGTCTAAAAGAAA
AATACAAGGATAATATTGTATATGGTCAACAAAGAGGTGGCGTATTCTATATGTCTACTAATATTGATCGTGTGTCATAC
AATCATACTGCTAAAACAAGTGATGTAGAAAAATCCTCTACTAAGAAAGCACTTTTAAACAAAGATTTCCGTCAAGCCTT
GGCATTTGCTGCAGATCGTAAAGCAGCTGTTTCTCAGGTGTTTGGGGATGAAGTGGCGCCTCGTAAATTACGTACAAGTT
TCACTCCTCCAACATTTGTACAAGTTGGAGACCAATCGTTTGGTCAAGTAACTAAGATAGAATTGGATAAATTGGATAAT
GTCTGGAAAGATGTCAGTCTTGATGATGCGCAAGATTCACTTCATAACGTAGACAAGGCTAAAGCTAAGTTTGAATCTGC
TAAGAAAACTCTTCAAGCTGATGGAGTACAGTTCCCAATTCATTTAGATCTTCCAGTTTCATCGACTCAGACAGATTTTA
TCCATCAAGCTCAGTCTTATAAACAATCCATTGAAGAAGCCTTGGGCTCTGAAAATGTAGTTGTTGACATTCAACAGGTT
TCTGATGATGAATTGGGAAACATGACTGTTCTAGCAACATCAAATAATAATGTTGATTGGGACATTAATGTTAATAGTGG
TTGGAGTCCGGATTATGCAGATCCATCAACTTATCTAGATGTATTTGATCCAACTTCAGGTCCAAGTCTCCTCGGCTCTC
TTGGTGTAGCACCAGGAACAGACAATCAAGCCATTAAAACAGTTGGATTGGATAAATACAAAGGATTGATTGATGATGCA
AATAGTGAAAAAACAGATCTGCAAAAACGTTATTCTAAATATGCTAAGGCGCAAGCTTGGTTAACAGATAGTGCTCTAGT
TATTCCTGTACACTCAGACGGTGCCCAAATGTTAGTAACGAAGAAAGTATTAGGTAGTGGTGCTGATGGTTGGATTGGTG
ACAAAACAGGAGATAACAGTTATAAATATCTTAAACTCCAAGATAAGATTGTCACTTCCAAAGAAATGGATGAGTTCCGC
AAGAAATTTGCTGATGAAAAAGGCAAATCCAATGCTGATTATCAGAAGAACTTAGACCGTCATATTCAAGACTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(82-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.904

100

0.541
  amiA3 Streptococcus thermophilus LMG 18311

53.453

100

0.536
  amiA Streptococcus salivarius strain HSISS4

53.083

100

0.532

Multiple sequence alignment