Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LZ585_RS09600 Genome accession   NZ_CP090836
Coordinates   1950487..1950984 (+) Length   165 a.a.
NCBI ID   WP_234853358.1    Uniprot ID   -
Organism   Paracoccus everestensis strain S8-55     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1945487..1955984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ585_RS09580 - 1946903..1947718 (+) 816 WP_234853354.1 glycosyl transferase -
  LZ585_RS09585 - 1947720..1948241 (+) 522 WP_234853355.1 hypothetical protein -
  LZ585_RS09590 - 1948305..1949594 (+) 1290 WP_234853356.1 homoserine dehydrogenase -
  LZ585_RS09595 - 1949682..1950317 (-) 636 WP_234853357.1 lytic transglycosylase domain-containing protein -
  LZ585_RS09600 ssb 1950487..1950984 (+) 498 WP_234853358.1 single-stranded DNA-binding protein Machinery gene
  LZ585_RS09605 aroB 1951005..1952114 (-) 1110 WP_234853359.1 3-dehydroquinate synthase -
  LZ585_RS09610 - 1952111..1952662 (-) 552 WP_234853360.1 shikimate kinase -
  LZ585_RS09615 - 1952786..1952956 (+) 171 WP_234853361.1 hypothetical protein -
  LZ585_RS09620 - 1952953..1954410 (+) 1458 WP_234853362.1 hypothetical protein -
  LZ585_RS09625 - 1954407..1955372 (+) 966 WP_234853363.1 site-specific tyrosine recombinase XerD -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17778.38 Da        Isoelectric Point: 5.8284

>NTDB_id=645018 LZ585_RS09600 WP_234853358.1 1950487..1950984(+) (ssb) [Paracoccus everestensis strain S8-55]
MAGSVNKVILIGNLGADPEIRTFQNGGKIANLRIATSETWKDRSTGERKERTEWHTVVIHSEPLVRVAEQYLKKGSKIYV
EGQLETRKWQDQSGADRYSTEVALRPYRSELTMLEGRGGAGGGGSRDGGGYDDYDRGGSSSGSQGGGSQGGGGSSRSDYD
DEIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=645018 LZ585_RS09600 WP_234853358.1 1950487..1950984(+) (ssb) [Paracoccus everestensis strain S8-55]
ATGGCAGGCAGCGTCAACAAGGTCATCCTGATCGGCAATCTGGGCGCCGACCCCGAAATCCGCACGTTTCAAAATGGCGG
CAAGATCGCGAACCTGCGCATCGCCACGTCCGAAACGTGGAAGGACCGCAGCACGGGCGAGCGCAAGGAAAGGACCGAAT
GGCATACGGTCGTCATTCATTCCGAACCCCTGGTCCGCGTGGCCGAGCAGTATCTGAAGAAGGGCAGCAAGATCTATGTC
GAGGGGCAACTGGAAACCCGCAAATGGCAGGACCAGTCGGGGGCCGACCGTTATTCGACCGAGGTCGCGCTGCGCCCCTA
TCGCAGCGAACTGACGATGCTGGAAGGCCGGGGCGGTGCAGGTGGCGGCGGTAGCCGTGACGGGGGCGGCTATGACGATT
ACGACCGCGGCGGCTCGTCCTCGGGCAGCCAGGGCGGCGGCAGCCAGGGCGGTGGCGGCAGCAGCCGCAGCGATTACGAC
GACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.143

100

0.521
  ssb Glaesserella parasuis strain SC1401

44.624

100

0.503
  ssb Neisseria gonorrhoeae MS11

38.547

100

0.418
  ssb Neisseria meningitidis MC58

37.989

100

0.412